Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_K10
         (1309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.066
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.066
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.20 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.27 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.81 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    28   3.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.5 bits (73), Expect = 0.066
 Identities = 30/108 (27%), Positives = 31/108 (28%), Gaps = 7/108 (6%)
 Frame = -1

Query: 658  PPXXXFGGGRXXPPPXXXXXPPGPXFFAXXSHPXPFLXXXPPPXXGGXPXXXWGGGGGXP 479
            PP     G    P P     PP P        P P +   P P   G P          P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAA-PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170

Query: 478  ---PXXG-PXXPXXGXXXXPXXXP---PPPPPPXXKXXPPPPXXXXPP 356
               P  G P  P       P   P   PP P P     P PP    PP
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 31.5 bits (68), Expect = 0.27
 Identities = 26/101 (25%), Positives = 27/101 (26%)
 Frame = -1

Query: 658  PPXXXFGGGRXXPPPXXXXXPPGPXFFAXXSHPXPFLXXXPPPXXGGXPXXXWGGGGGXP 479
            PP     G    P P     PP P        P P +   P P              G P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAA-PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189

Query: 478  PXXGPXXPXXGXXXXPXXXPPPPPPPXXKXXPPPPXXXXPP 356
            P   P          P    PP PPP      P P    PP
Sbjct: 1190 PVPPPSEAPP--VPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.066
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 421 PPPPPPPXXKXXPPPPXXXXPP 356
           PPPPPPP      PPP    PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.1 bits (67), Expect = 0.35
 Identities = 20/71 (28%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
 Frame = -1

Query: 598 PPGPXFFAXXSHPXPFLXXXPPPXXGG--XPXXXWGGGGGXPPXXGPXXPXXGXXXXPXX 425
           PP P        P P     P P  GG   P    G  G  PP   P  P          
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793

Query: 424 XPPPPPPPXXK 392
            P P   P  K
Sbjct: 794 APAPQAEPEPK 804



 Score = 29.9 bits (64), Expect = 0.81
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 421 PPPPPPPXXKXXPPPPXXXXPP 356
           PPPPPPP       PP    PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 433 PXXXPPPPPPPXXKXXPPPP 374
           P   P PPP P     PPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPP 765



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 421 PPPPPPPXXKXXPPPPXXXXPP 356
           PPPPPP      P P     PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP 753



 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -1

Query: 478 PXXGPXXPXXGXXXXPXXXPPPPPPPXXKXXPPPPXXXXP 359
           P   P  P       P    PPPPP      PPPP    P
Sbjct: 746 PAPIPVPPPAPIMGGPPP--PPPPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 25/72 (34%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
 Frame = +3

Query: 357 GGXXXXGG-GGXXFXXGGGGG-GGXXXGXXXXPXXGXXGPXXGGXPPPPPQXXXGXPPXX 530
           GG    GG GG     GG GG GG   G    P     GP   G          G P   
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG---GFGGGPGGF 261

Query: 531 GGGXXXKXGXGW 566
           GGG     G GW
Sbjct: 262 GGGPGGHGGPGW 273



 Score = 26.2 bits (55), Expect = 10.0
 Identities = 27/87 (31%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
 Frame = +3

Query: 375 GGGGXXFXXGGGGGGG---XXXGXXXXPXXGXXGPXXGGXP--PPPPQXXXGXPPXXGGG 539
           G  G  F   GGG GG      G       G  G   GG       P    G P   GGG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243

Query: 540 XXXKXGXGWEXXAKKXGPGGQXXXXGG 620
                G G        GPGG     GG
Sbjct: 244 ---PGGFGGGLGGFGGGPGGFGGGPGG 267


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 433 PXXXPPPPPPPXXKXXPPPPXXXXPP 356
           P   PPPPPPP     P  P    PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 478 PXXGPXXPXXGXXXXPXXXPPPPPPP 401
           P   P  P       P   PPPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 481 PPXXGPXXPXXGXXXXPXXXPPPPPPPXXK 392
           PP   P  P       P   PPPPPP   K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 25/102 (24%), Positives = 26/102 (25%)
 Frame = -1

Query: 661 PPPXXXFGGGRXXPPPXXXXXPPGPXFFAXXSHPXPFLXXXPPPXXGGXPXXXWGGGGGX 482
           PPP     G    PP      PP P   A  +   P     PP                 
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP-----PPLSSSRAVSNPPAPPPAI 395

Query: 481 PPXXGPXXPXXGXXXXPXXXPPPPPPPXXKXXPPPPXXXXPP 356
           P    P  P  G        P P PP      PP      PP
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 31/112 (27%), Positives = 31/112 (27%), Gaps = 10/112 (8%)
 Frame = -1

Query: 661 PPPXXXFGGGRXXPPPXXXXXPPGPXFF--AXXSHPXPFLXXXPPPXXGGXPXXXWGGGG 488
           PPP      G    PP     P  P     A  S   P L   PPP              
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPL---PPPSSRVSAAALAANKK 309

Query: 487 GXPPXXGPXX-----PXXGXXXXPXXXPPPPPPPXXK---XXPPPPXXXXPP 356
             PP   P       P  G        PPPPPPP        P PP     P
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361



 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
 Frame = -1

Query: 481 PPXXGPXXPXXGXXXXPXXXPPPPP-PPXXKXXPPPP 374
           PP   P  P       P   P  PP PP     PP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect(2) = 1.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 433 PXXXPPPPPPP 401
           P   PPPPPPP
Sbjct: 234 PLPAPPPPPPP 244



 Score = 21.4 bits (43), Expect(2) = 1.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 418 PPPPPPXXKXXPP 380
           P PPPP     PP
Sbjct: 236 PAPPPPPPPTLPP 248


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
 Frame = -1

Query: 502  WGGGGGXPPXXGPXXPXXGXXXXPXXXPPPPPPPXXKXXPP--PPXXXXPP 356
            +GG     P   P              P PPPPP     PP  PP    PP
Sbjct: 1678 FGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 466  PXXPXXGXXXXPXXXPPPPPPP 401
            P  P       P   PPPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPPP 1101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.144    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,531
Number of Sequences: 5004
Number of extensions: 23059
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 715384080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)