Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_K10
         (1309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.47 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.63 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect(2) = 0.47
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 448 GXXXXPXXXPPPPPPP 401
           G    P    PPPPPP
Sbjct: 333 GDSDTPPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect(2) = 0.47
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 421 PPPPPPPXXKXXP 383
           P PPPPP     P
Sbjct: 341 PAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.63
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = -1

Query: 499 GGGGGXP-PXXGPXXPXXGXXXXPXXXPPPPPPP 401
           G  G  P P   P  P  G    P   PPP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 421  PPPPPPP 401
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 421  PPPPPPP 401
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.144    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,427
Number of Sequences: 438
Number of extensions: 5607
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45023625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)