Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K09
(1282 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 98 3e-21
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 92 1e-19
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 28 2.4
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 28 3.2
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 27 4.2
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 7.4
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 7.4
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 97.9 bits (233), Expect = 3e-21
Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 6/211 (2%)
Frame = +1
Query: 172 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 351
PLE+ P+VL +LQK+GV + ++ D+ L+ E ++PRPV +++ +FP S +K
Sbjct: 4 PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61
Query: 352 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 528
+ IL K S + + Q I NACGTI L+H+V+N ++++ ++ + A+
Sbjct: 62 SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115
Query: 529 GLDATARGKLLEKSEGIINAHKEXAQEGQTNTPSAED-PVNHHFISFV----QKDGALYE 693
G R KL+E S+ + H A S ED + HFI FV + D YE
Sbjct: 116 GSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYE 175
Query: 694 LDGRKAFPVNHGPTSQETLLEDAAKICKEFM 786
LDGR+ PV H + L + + K ++
Sbjct: 176 LDGRQEGPVQHSEIESDLLNAEVLSVIKNYI 206
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 92.3 bits (219), Expect = 1e-19
Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 6/237 (2%)
Frame = +1
Query: 175 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 354
+ES+ V ++ LGV + + ++ LD ++L P + ++ LF + + T
Sbjct: 6 IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63
Query: 355 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 534
+ + + NIF+ KQ I+NAC T AL+ + N++D I+L + +F + +K L
Sbjct: 64 MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGTT-LSEFKDFSKTL 115
Query: 535 DATARGKLLEKSEGIINAHKEXAQEG-----QTNTPSAEDPVNHHFISFVQKDGALYELD 699
+G+ L SE I H A+ + + ED V +HFI++ + YELD
Sbjct: 116 PPELKGEALGNSEHIRCCHNSFARSDPFISEEVRAATDEDEV-YHFIAYTNINNVFYELD 174
Query: 700 GRKAFPVNHGPTSQETLLEDAAKICKEFMAR-DPNEVRFTVIALVASD*LISFLSFE 867
G +A P+NHG ++E E A + + +A DP E+RF ++ ++ D S L+ E
Sbjct: 175 GLQAAPINHGSCTKEEFAEKAVSVIQARIANYDPAEIRFNLM-VICKDKKASLLTRE 230
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +1
Query: 577 IINAHKEXAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNH-GPTSQETLL 753
+I+ + E A+E + + + E + H IS ++ ++ D P PT+ E ++
Sbjct: 1205 VISKYIENAKEIELDAVAREGKMVMHVISEHVENAGVHSGDATLVLPPQDLAPTTIERIV 1264
Query: 754 EDAAKICKEFMARDPNEVRF 813
+ AAKI + P ++F
Sbjct: 1265 DAAAKIGEALNITGPYNIQF 1284
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 258 SHDIYNIPFVWYAELLQKLVQDIGIGFKRD*SFGRHFSHSNCGVDEGD 115
+H + F W E L + + DIG+ D S+G H S D GD
Sbjct: 133 AHSKIDKEFGWLLEDLDQEIDDIGVPGTEDPSYG-HSEDSEVSDDTGD 179
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 674 KMEHCMS*MAVKLFLSIMAQLHRKLCWKMQQKFAKN 781
+M HC S L I L R L W+ +QK A N
Sbjct: 508 RMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMN 543
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 631 AEDPVNHHFISFVQKDGALYELDGR 705
AE+ V HF+ KD LY++D R
Sbjct: 1099 AEESVKRHFLRLWLKDNGLYDVDIR 1123
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 613 QTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQETLL 753
+TNT V ++++V + + L K F H P+S E L+
Sbjct: 139 KTNTSHMIHQVYDQYLNYVVLESDFFSLQLPKIFHTFHNPSSDEALI 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,096,099
Number of Sequences: 5004
Number of extensions: 80235
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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