Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K09
(1282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 167 1e-41
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 122 6e-28
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 88 2e-17
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 74 2e-13
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 68 1e-11
12_02_0999 - 25134828-25135113,25135479-25135535,25136171-251362... 29 6.0
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 167 bits (407), Expect = 1e-41
Identities = 84/221 (38%), Positives = 136/221 (61%), Gaps = 1/221 (0%)
Frame = +1
Query: 169 VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHK 348
+PLE+NP+V+N+F++ LGVP + DV GLD E L+ VP+PVL+V+LL+P D +
Sbjct: 6 LPLEANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLAVILLYP-QDRKKESV 64
Query: 349 KTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEA 525
+ + + SK ++S N+++ KQ I NACGT+ ++H++ N I+L +G + +F +
Sbjct: 65 ASPSSTVESK--KLSKNVYFTKQTIGNACGTVGIIHAIGNALSRIKLVEGSYFDRFYKQT 122
Query: 526 KGLDATARGKLLEKSEGIINAHKEXAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGR 705
+D R LE+ E + AH G T A+D V H++ F D ++ELDG
Sbjct: 123 ADMDPAQRASFLEEDEEMEKAHSVAVSAGDT---EAKDGVIEHYVCFSCVDDEIFELDGG 179
Query: 706 KAFPVNHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIAL 828
+ P++HGP+S ++LL+DAAK+ K +A+ P + F V+AL
Sbjct: 180 NSQPISHGPSSPDSLLQDAAKVIKARIAQYPGSLNFNVMAL 220
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 122 bits (294), Expect = 6e-28
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Frame = +1
Query: 385 EVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATARGKLL 561
++S +++ KQ + NACGT+ ++H++ N ++L +G + +F + +D R L
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQRAAFL 251
Query: 562 EKSEGIINAHKEXAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQ 741
E+ + + +AH A G T+ A VN HF+ F DG LYELDGRK+ P+ HGP+S
Sbjct: 252 EEDDEMEDAHSVAASAGDTD---ANVEVNEHFVCFSCVDGELYELDGRKSQPICHGPSSP 308
Query: 742 ETLLEDAAKICKEFMARDPNEVRFTVIAL 828
+TLL+DAAK+ K +A +P+ + F V+AL
Sbjct: 309 DTLLQDAAKVIKARIASNPDSMNFNVMAL 337
Score = 39.1 bits (87), Expect = 0.007
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +1
Query: 202 KFLQKLGVPN-KWNIVDVMGLDPETLSWVPRPVLSVMLLFPIS 327
+F+ LGV + DV GLD E L+ VP+PVL+V+ L+P++
Sbjct: 65 QFMWGLGVAEGEAQFCDVYGLDDELLAMVPQPVLAVLFLYPLT 107
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 87.8 bits (208), Expect = 2e-17
Identities = 68/206 (33%), Positives = 95/206 (46%), Gaps = 21/206 (10%)
Frame = +1
Query: 202 KFLQKLGVPNKW-NIVDVMGLDPETLSWVPRPVLSVMLLFP------------------I 324
+ + LGVP DV LD + L VP+PVL+V+ FP +
Sbjct: 139 QLMWSLGVPEDVAEFHDVYSLDADALEMVPQPVLAVVFCFPDPTQLSTIMGFSLYLIYTL 198
Query: 325 SDAYENHKKTEENEILSKGQEVSGNIFYMKQ--NISNACGTIALVHSVANNTDIIELSDG 498
S +L G++ + +F++KQ ++ NACGTIAL+H+V N I L
Sbjct: 199 SPTSVQDASNPSQHLLITGEKET--LFFIKQIESLGNACGTIALLHAVGNAYSEISLCK- 255
Query: 499 HMQKFLNEAKGLDATARGKLLEKSEGIINAHKEXAQEGQTNTPSAEDPVNHHFISFVQKD 678
R LEK + + AH A G T D V H+I FV+ D
Sbjct: 256 ----------------RAVFLEKDDDMARAHLSAASAGDTKL---SDDVEEHYICFVECD 296
Query: 679 GALYELDGRKAFPVNHGPTSQETLLE 756
G LYELDG K P+NHGP+S ++LL+
Sbjct: 297 GTLYELDGMKPGPINHGPSSSKSLLQ 322
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 74.1 bits (174), Expect = 2e-13
Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 7/226 (3%)
Frame = +1
Query: 175 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 354
+E++P + + LQ++ + + ++ LD + L+ + +PV +++L+ ++ +K
Sbjct: 60 IENDPGIFTELLQQMQLKGL-QVDELYSLDLDALNDL-QPVYGLIVLYK----WQPPEK- 112
Query: 355 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 534
+E I ++ N+F+ KQ I+NAC T A+V SV N+ I LS+ ++K AK L
Sbjct: 113 DERPI----KDPIPNLFFAKQIINNACATQAIV-SVLLNSPGITLSE-ELKKLKEFAKDL 166
Query: 535 DATARGKLLEKSEGIINAHKEXAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELDGRK 708
+G + SE I A A+ + S +D +HFIS+V DG LYELDG K
Sbjct: 167 PPDLKGLAIVNSESIRLASNSFARPEVPEEQKSSVKDDDVYHFISYVPVDGVLYELDGLK 226
Query: 709 AFPVNHG--PTSQETL--LEDAAKICKEFMAR-DPNEVRFTVIALV 831
P++ G P + L + +E + R NE+RF+V+A++
Sbjct: 227 EGPISLGKCPGGVGDIGWLRMVQPVIQERIDRFSQNEIRFSVMAIL 272
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 68.1 bits (159), Expect = 1e-11
Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 10/229 (4%)
Frame = +1
Query: 175 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 354
+ES+P V + +Q++ V + ++ LD +++S + RPV ++ LF + +K
Sbjct: 6 IESDPGVFTELIQEMQVKGV-QVEELYSLDVDSISEL-RPVYGLIFLFK----WMAGEKD 59
Query: 355 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 534
E + ++ + N+F+ Q I NAC T A++ + N E+ G L E G
Sbjct: 60 ERPVV----KDPNPNLFFASQVIPNACATQAILSILMNRP---EIDIGPELSNLKEFTGA 112
Query: 535 DAT-ARGKLLEKSEGIINAHKEXAQE----GQTNTPSAEDPVNHHFISFVQKDGALYELD 699
A +G + S+ I AH A+ + +D +HFIS++ +G LYELD
Sbjct: 113 FAPDMKGLAINNSDSIRTAHNSFARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVLYELD 172
Query: 700 GRKAFPV-----NHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIALV 831
G K P+ + GP + L I K +E+RF ++A++
Sbjct: 173 GLKEGPISLGQCSGGPDDLDWLRMVQPVIQKRIERYSQSEIRFNLMAII 221
>12_02_0999 -
25134828-25135113,25135479-25135535,25136171-25136296,
25136399-25137289,25137379-25137533
Length = 504
Score = 29.5 bits (63), Expect = 6.0
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 619 NTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQE 744
++PSA ++ F+S + DG++ L+G+ F + GP + +
Sbjct: 273 DSPSATGTMSSAFMSSLSMDGSVASLEGKPPFHLISGPVASD 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,981,405
Number of Sequences: 37544
Number of extensions: 503878
Number of successful extensions: 1099
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3980760984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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