Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_K07
         (1274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   3.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   9.7  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   9.7  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 289 MTTASVPSTASCTESGSRTFPLTISTLSLRCSGS 188
           +TT S  +TASCT   S T   T +++S  C+G+
Sbjct: 762 VTTTSTTATASCTLPISYTSTPTTTSISGTCNGA 795


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 286 TTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLRAA--STAFKPI 113
           +T+SVP+    + S + + P+++++ S   SGS   S T   T      +    T   PI
Sbjct: 259 STSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPI 318

Query: 112 TPVEPKITT 86
           T   P +++
Sbjct: 319 TTSAPSLSS 327


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +1

Query: 166 RSYVTQQNSQNILKTRSR*SKEMFSNQTRYMRPSKEQTLSSSP*GLGTTWRRLR 327
           R YV+Q+N     K      +++++ + RY  P K++++S +P  +  ++R LR
Sbjct: 19  RGYVSQENKVKRRKRLFNAIRKLWNERRRYRMP-KDESISPTP--ISYSFRSLR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,895,027
Number of Sequences: 5004
Number of extensions: 78511
Number of successful extensions: 212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)