Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_K05
         (1361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    26   0.66 
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    26   0.66 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   8.1  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 183 GLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTH-IRAKR 347
           GLQ K      D +   +    YEKR+ +   V     + K  + R+G H +R KR
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK--RARMGFHGMRGKR 266


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 183 GLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTH-IRAKR 347
           GLQ K      D +   +    YEKR+ +   V     + K  + R+G H +R KR
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK--RARMGFHGMRGKR 266


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 781 PXPPPPPP 758
           P PPPPPP
Sbjct: 341 PAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 781  PXPPPPPP 758
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 781  PXPPPPPP 758
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 309 LKRRLGTHIRAKRKREELSNVLAQMRK 389
           L RR G   +   +REE+ NVL ++ K
Sbjct: 162 LIRRTGEGSKPLFEREEIKNVLTKINK 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,501
Number of Sequences: 438
Number of extensions: 3368
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 47184759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)