Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_K03
         (1260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    30   0.59 
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.8  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    28   2.4  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   9.5  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   9.5  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   9.5  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   9.5  

>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -2

Query: 557 RTKGFFDSSLSLVRLLRGYRNGESTFKISSKSVEVMIFS 441
           +T+G F S + L  LL+ Y NG  T+K S K+V V++ S
Sbjct: 678 QTEGTFTSKVILTDLLKCYSNG--TYKASFKNVHVVLRS 714


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -2

Query: 479 KISSKSVEVMIF---SKLSKLLSG*VNFIYFNYFCKYIFRINSSNFFRTNGKKSFIIRVP 309
           KI+SK   V +    ++ S LLSG  + + F  F KYI  +N   +    G  S+  R+ 
Sbjct: 54  KINSKGFTVYVLDATTRRSALLSGKHDTMIFTLFVKYITSLNHPEYLLLGG-YSYGARIS 112

Query: 308 IKFKIWILVERPLT 267
           +   I + +++ ++
Sbjct: 113 MHKSITLAIDKRIS 126


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 327 TFLPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFEST 488
           ++  I  + +  + PK+I  K++K +K +   E L +  K   FD+   + E T
Sbjct: 601 SYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESEVT 654


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 150 ANGSGNKRKNDESSIK-CGFNVRHAVFQIFTHNNTXKNG 37
           ANG  N +KND+S  K    N    VF+I  + NT   G
Sbjct: 101 ANGRKNGQKNDDSKKKGLNGNDPKKVFEIALNGNTILGG 139


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +3

Query: 306 YWDPDNKTF-------LPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDR 464
           YW PDNK         L I  ++  T     + T + +++K N P + +  F    +FD+
Sbjct: 544 YW-PDNKDHALCLEGGLRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHHFWVHTWFDK 602

Query: 465 FRGDFES 485
              D ES
Sbjct: 603 THPDIES 609


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 931 KKMLXWGNXXAXAYWXP 981
           +KM  WGN  A  YW P
Sbjct: 74  EKMKHWGNINANRYWNP 90


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 375 NIFTKVVKINKINSPREQLAEFRKDHY---FDRFRGDFE 482
           N F K   + +I S    ++EF+K  Y   FD F+  F+
Sbjct: 163 NFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFK 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,653,010
Number of Sequences: 5004
Number of extensions: 63525
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)