Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K02
(1280 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.19
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.19
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.19
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 30 4.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 30 4.1
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 29 5.4
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 7.1
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.1
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.1
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 29 7.1
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 7.1
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 7.1
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 7.1
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 7.1
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 7.1
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.3 bits (75), Expect = 0.19
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -3
Query: 1224 PPXGXXXXXPXXXXGXXXXXXGXGGXPXXXPXXPXGGGFFXXXXPPPPPP 1075
PP P G GG P P P GG F PPPPPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG--FKGGPPPPPPP 790
Score = 27.5 bits (58), Expect(2) = 3.4
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 1155 GGXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
GG P P P GG PPPPPP P
Sbjct: 740 GGPP---PPPPPGGLPPISGGPPPPPPPP 765
Score = 25.0 bits (52), Expect(2) = 4.3
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -3
Query: 1134 PXXPXGGGFFXXXXPPPPPPXP 1069
P P GG PPPPP P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPP 748
Score = 23.0 bits (47), Expect(2) = 4.3
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = -3
Query: 957 PXXGGXPXPXXXFXXXGXPXPPPXXG 880
P GG P P P PPP G
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 21.0 bits (42), Expect(2) = 3.4
Identities = 12/33 (36%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Frame = -3
Query: 957 PXXGGXPXPXXX---FXXXGXPXPPPXXGXPXP 868
P GG P P G P PPP G P
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.3 bits (75), Expect = 0.19
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -3
Query: 1224 PPXGXXXXXPXXXXGXXXXXXGXGGXPXXXPXXPXGGGFFXXXXPPPPPP 1075
PP P G GG P P P GG F PPPPPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG--FKGGPPPPPPP 790
Score = 27.5 bits (58), Expect(2) = 3.4
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 1155 GGXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
GG P P P GG PPPPPP P
Sbjct: 740 GGPP---PPPPPGGLPPISGGPPPPPPPP 765
Score = 25.0 bits (52), Expect(2) = 4.3
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -3
Query: 1134 PXXPXGGGFFXXXXPPPPPPXP 1069
P P GG PPPPP P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPP 748
Score = 23.0 bits (47), Expect(2) = 4.3
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = -3
Query: 957 PXXGGXPXPXXXFXXXGXPXPPPXXG 880
P GG P P P PPP G
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 21.0 bits (42), Expect(2) = 3.4
Identities = 12/33 (36%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Frame = -3
Query: 957 PXXGGXPXPXXX---FXXXGXPXPPPXXGXPXP 868
P GG P P G P PPP G P
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.3 bits (75), Expect = 0.19
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -3
Query: 1224 PPXGXXXXXPXXXXGXXXXXXGXGGXPXXXPXXPXGGGFFXXXXPPPPPP 1075
PP P G GG P P P GG F PPPPPP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG--FKGGPPPPPPP 373
Score = 27.5 bits (58), Expect(2) = 3.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 1155 GGXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
GG P P P GG PPPPPP P
Sbjct: 323 GGPP---PPPPPGGLPPISGGPPPPPPPP 348
Score = 25.0 bits (52), Expect(2) = 4.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -3
Query: 1134 PXXPXGGGFFXXXXPPPPPPXP 1069
P P GG PPPPP P
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPP 331
Score = 23.0 bits (47), Expect(2) = 4.5
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = -3
Query: 957 PXXGGXPXPXXXFXXXGXPXPPPXXG 880
P GG P P P PPP G
Sbjct: 336 PISGGPPPPPPPPGGCPPPPPPPPPG 361
Score = 21.0 bits (42), Expect(2) = 3.5
Identities = 12/33 (36%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Frame = -3
Query: 957 PXXGGXPXPXXX---FXXXGXPXPPPXXGXPXP 868
P GG P P G P PPP G P
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.9 bits (64), Expect = 4.1
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 1155 GGXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
GG P P GG PPPPPP P
Sbjct: 655 GGSSMPMPVPPPGGLGGFMPPPPPPPPMP 683
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 1076 GGGGGGXXXXKXPPPXGXXGXXXGXPPXP 1162
G GGG PPP G G PP P
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPP 680
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.9 bits (64), Expect = 4.1
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 1155 GGXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
GG P P GG PPPPPP P
Sbjct: 655 GGSSMPMPVPPPGGLGGFMPPPPPPPPMP 683
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 1076 GGGGGGXXXXKXPPPXGXXGXXXGXPPXP 1162
G GGG PPP G G PP P
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPP 680
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 29.5 bits (63), Expect = 5.4
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +2
Query: 1076 GGGGGGXXXXKXPPPXGXXGXXXGXPPXPXXXXXXPXXXXGXXXXXPXGG 1225
GGGGGG PPP G G P P G P GG
Sbjct: 22 GGGGGGCC--APPPPPPCGGGCGGGAPAAGGYAVAPQAPIGGGYAQPGGG 69
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical protein
ZC168.5 protein.
Length = 172
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 1146 PXXXPXXPXGGGFFXXXXPPPPPP 1075
P P P GGG+ PPPPPP
Sbjct: 39 PPPPPPPPCGGGY--EAPPPPPPP 60
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -3
Query: 1161 GXGGXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
G GG GGG+ PPPPP P
Sbjct: 278 GGGGSSGGYAGSSGGGGYSAPAAAPPPPPPP 308
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -3
Query: 1161 GXGGXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
G GG GGG+ PPPPP P
Sbjct: 278 GGGGSSGGYAGSSGGGGYSAPAAAPPPPPPP 308
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical protein
F41F3.3 protein.
Length = 156
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 1125 PXGGGFFXXXXPPPPPPXP 1069
P GGG PPPPPP P
Sbjct: 20 PSGGGGGCGCAPPPPPPSP 38
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 1161 GXGGXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
G GG P P GGG PP PP P
Sbjct: 622 GGGGGPPRGPGGGGGGGPTGPPAPPKPPAKP 652
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 1152 GXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
G P P P G G PPPPPP P
Sbjct: 232 GAPPPPPLPPVGAG---APPPPPPPPPP 256
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisomerase
III protein.
Length = 759
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 1161 GXGGXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
G GG P P GGG PP PP P
Sbjct: 622 GGGGGPPRGPGGGGGGGPTGPPAPPKPPAKP 652
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 1152 GXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
G P P P G G PPPPPP P
Sbjct: 218 GAPPPPPLPPVGAG---APPPPPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 1152 GXPXXXPXXPXGGGFFXXXXPPPPPPXP 1069
G P P P G G PPPPPP P
Sbjct: 218 GAPPPPPLPPVGAG---APPPPPPPPPP 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,344,203
Number of Sequences: 27780
Number of extensions: 372620
Number of successful extensions: 3019
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2012
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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