Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_J24
(1263 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.14
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.14
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.14
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 34 0.19
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.19
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.19
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.19
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 33 0.43
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 33 0.43
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.75
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.75
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 2.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 2.3
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 30 4.0
U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog (hedg... 30 4.0
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 30 4.0
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 30 4.0
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 5.3
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 5.3
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 5.3
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 5.3
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 5.3
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 7.0
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 7.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 9.2
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.7 bits (76), Expect = 0.14
Identities = 21/64 (32%), Positives = 21/64 (32%)
Frame = +2
Query: 278 PPPXXKXXXXGGGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGGXKKXXKKXPFSXX 457
PPP GG PPP GG P PPGG G P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP---PPPGGLPPISGGPPPPPPPPGGCP 769
Query: 458 PPPP 469
PPPP
Sbjct: 770 PPPP 773
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -2
Query: 413 PPXPXPPGXKXPXXXFFXXXXPXPPPXXGGGGXPPXXXXXXXXGGG 276
PP P PPG P P PPP GG PP GG
Sbjct: 742 PPPPPPPGGLPP----ISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -2
Query: 416 PPPXPXPPGXKXPXXXFFXXXXPXPPPXXGGGGXPP 309
PPP P PPG P P PPP GG PP
Sbjct: 758 PPPPPPPPGGCPPPP-------PPPPPGGFKGGPPP 786
Score = 29.1 bits (62), Expect = 7.0
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = -2
Query: 413 PPXPXPPGXKXPXXXFFXXXXPXPPPXXGG-----GGXPP 309
PP P PPG P P PPP GG GG PP
Sbjct: 726 PPPPPPPGGLPPITG-----GPPPPPPPGGLPPISGGPPP 760
Score = 28.7 bits (61), Expect = 9.2
Identities = 24/79 (30%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Frame = +3
Query: 840 PPPXXXXPQXGGXXXXTPGXXX----GGPPPXXXXPXXXXPXGGGGGXNXXFXXGXKKXP 1007
PPP P GG P GGPPP P P GG G P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP-PGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 1008 XPPXFFXKKKXFXXXPPXG 1064
PP K PP G
Sbjct: 773 PPPPPGGFKGGPPPPPPPG 791
Score = 28.7 bits (61), Expect = 9.2
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -3
Query: 967 PPPPPXGXXXFGXXXXGGGPPXKXPGVXXXXPP 869
PPPPP G G GGPP P PP
Sbjct: 743 PPPPPPG----GLPPISGGPPPPPPPPGGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.7 bits (76), Expect = 0.14
Identities = 21/64 (32%), Positives = 21/64 (32%)
Frame = +2
Query: 278 PPPXXKXXXXGGGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGGXKKXXKKXPFSXX 457
PPP GG PPP GG P PPGG G P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP---PPPGGLPPISGGPPPPPPPPGGCP 769
Query: 458 PPPP 469
PPPP
Sbjct: 770 PPPP 773
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -2
Query: 413 PPXPXPPGXKXPXXXFFXXXXPXPPPXXGGGGXPPXXXXXXXXGGG 276
PP P PPG P P PPP GG PP GG
Sbjct: 742 PPPPPPPGGLPP----ISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -2
Query: 416 PPPXPXPPGXKXPXXXFFXXXXPXPPPXXGGGGXPP 309
PPP P PPG P P PPP GG PP
Sbjct: 758 PPPPPPPPGGCPPPP-------PPPPPGGFKGGPPP 786
Score = 29.1 bits (62), Expect = 7.0
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = -2
Query: 413 PPXPXPPGXKXPXXXFFXXXXPXPPPXXGG-----GGXPP 309
PP P PPG P P PPP GG GG PP
Sbjct: 726 PPPPPPPGGLPPITG-----GPPPPPPPGGLPPISGGPPP 760
Score = 28.7 bits (61), Expect = 9.2
Identities = 24/79 (30%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Frame = +3
Query: 840 PPPXXXXPQXGGXXXXTPGXXX----GGPPPXXXXPXXXXPXGGGGGXNXXFXXGXKKXP 1007
PPP P GG P GGPPP P P GG G P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP-PGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 1008 XPPXFFXKKKXFXXXPPXG 1064
PP K PP G
Sbjct: 773 PPPPPGGFKGGPPPPPPPG 791
Score = 28.7 bits (61), Expect = 9.2
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -3
Query: 967 PPPPPXGXXXFGXXXXGGGPPXKXPGVXXXXPP 869
PPPPP G G GGPP P PP
Sbjct: 743 PPPPPPG----GLPPISGGPPPPPPPPGGCPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.7 bits (76), Expect = 0.14
Identities = 21/64 (32%), Positives = 21/64 (32%)
Frame = +2
Query: 278 PPPXXKXXXXGGGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGGXKKXXKKXPFSXX 457
PPP GG PPP GG P PPGG G P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP---PPPGGLPPISGGPPPPPPPPGGCP 352
Query: 458 PPPP 469
PPPP
Sbjct: 353 PPPP 356
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -2
Query: 413 PPXPXPPGXKXPXXXFFXXXXPXPPPXXGGGGXPPXXXXXXXXGGG 276
PP P PPG P P PPP GG PP GG
Sbjct: 325 PPPPPPPGGLPP----ISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -2
Query: 416 PPPXPXPPGXKXPXXXFFXXXXPXPPPXXGGGGXPP 309
PPP P PPG P P PPP GG PP
Sbjct: 341 PPPPPPPPGGCPPPP-------PPPPPGGFKGGPPP 369
Score = 29.1 bits (62), Expect = 7.0
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = -2
Query: 413 PPXPXPPGXKXPXXXFFXXXXPXPPPXXGG-----GGXPP 309
PP P PPG P P PPP GG GG PP
Sbjct: 309 PPPPPPPGGLPPITG-----GPPPPPPPGGLPPISGGPPP 343
Score = 28.7 bits (61), Expect = 9.2
Identities = 24/79 (30%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Frame = +3
Query: 840 PPPXXXXPQXGGXXXXTPGXXX----GGPPPXXXXPXXXXPXGGGGGXNXXFXXGXKKXP 1007
PPP P GG P GGPPP P P GG G P
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP-PGGLPPISGGPPPPPPPPGGCPPPP 355
Query: 1008 XPPXFFXKKKXFXXXPPXG 1064
PP K PP G
Sbjct: 356 PPPPPGGFKGGPPPPPPPG 374
Score = 28.7 bits (61), Expect = 9.2
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -3
Query: 967 PPPPPXGXXXFGXXXXGGGPPXKXPGVXXXXPP 869
PPPPP G G GGPP P PP
Sbjct: 326 PPPPPPG----GLPPISGGPPPPPPPPGGCPPP 354
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 34.3 bits (75), Expect = 0.19
Identities = 46/202 (22%), Positives = 47/202 (23%), Gaps = 4/202 (1%)
Frame = +3
Query: 375 PGXFXPRGXGXXGGXXKXFXKXPLFXXXPPP-PFFXKKXPXFXXPPXGXXXKKKPPGGXX 551
PG F P G GG F PP PF P PP + PP G
Sbjct: 152 PGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGP 211
Query: 552 KXXXXXGGGXXXKKPXGXXXGXXPPKXGXXGXXPXFXPKXXXXKXGGXFXKKXXGGXXFX 731
G P G P G G F P G G
Sbjct: 212 TGPFDPSGAPPSGGPPGPFNPSGAPPSG--GPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 269
Query: 732 KX*XXGKXLXPGGXKKRGGXXXXXXXXXXXXXXXSXPP--PXXXXPQXGGXXXXTP-GXX 902
P G GG P P P G P G
Sbjct: 270 ---GPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAP 326
Query: 903 XGGPPPXXXXPXXXXPXGGGGG 968
G PP P P GG G
Sbjct: 327 PSGGPPGPFDPSGAPPSGGPPG 348
Score = 33.1 bits (72), Expect = 0.43
Identities = 46/202 (22%), Positives = 46/202 (22%), Gaps = 4/202 (1%)
Frame = +3
Query: 375 PGXFXPRGXGXXGGXXKXFXKXPLFXXXPPP-PFFXKKXPXFXXPPXGXXXKKKPPGGXX 551
PG F P G GG F PP PF P PP PP G
Sbjct: 287 PGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGP 346
Query: 552 KXXXXXGGGXXXKKPXGXXXGXXPPKXGXXGXXPXFXPKXXXXKXGGXFXKKXXGGXXFX 731
G P G P G G F P G G
Sbjct: 347 PGPFNPSGAPPSGGPPGPFDPSGAPPSG--GPPGPFDPSGAPPSGGPPGPFDPSGAPPSG 404
Query: 732 KX*XXGKXLXPGGXKKRGGXXXXXXXXXXXXXXXSXPP--PXXXXPQXGGXXXXTP-GXX 902
P G GG P P P G P G
Sbjct: 405 ---GPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 461
Query: 903 XGGPPPXXXXPXXXXPXGGGGG 968
G PP P P GG G
Sbjct: 462 PSGGPPGPFNPSGAPPSGGPPG 483
Score = 31.5 bits (68), Expect = 1.3
Identities = 25/92 (27%), Positives = 25/92 (27%), Gaps = 2/92 (2%)
Frame = +3
Query: 375 PGXFXPRGXGXXGGXXKXFXKXPLFXXXPPP-PFFXKKXPXFXXPPXGXXXKKKPPGGXX 551
PG F P G GG F PP PF P PP PP G
Sbjct: 407 PGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGP 466
Query: 552 KXXXXXGGGXXXKKPXG-XXXGXXPPKXGXXG 644
G P G PP G G
Sbjct: 467 PGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG 498
Score = 31.5 bits (68), Expect = 1.3
Identities = 25/92 (27%), Positives = 25/92 (27%), Gaps = 2/92 (2%)
Frame = +3
Query: 375 PGXFXPRGXGXXGGXXKXFXKXPLFXXXPPP-PFFXKKXPXFXXPPXGXXXKKKPPGGXX 551
PG F P G GG F PP PF P PP PP G
Sbjct: 422 PGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGP 481
Query: 552 KXXXXXGGGXXXKKPXG-XXXGXXPPKXGXXG 644
G P G PP G G
Sbjct: 482 PGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPG 513
Score = 31.1 bits (67), Expect = 1.7
Identities = 28/106 (26%), Positives = 29/106 (27%), Gaps = 2/106 (1%)
Frame = +2
Query: 314 GXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGGXKKXXKKXPFSXXPPPPXFXKKK-- 487
G PP GG G P PPG G G PF+ PP
Sbjct: 159 GAPP---SGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPF 215
Query: 488 XPFXXXPXGXXXKKKTPRGXPKXXXXXGGGAXXXKTXGGXXGGXPP 625
P P G P G P GG G G PP
Sbjct: 216 DPSGAPPSGGPPGPFNPSGAP----PSGGPPGPFDPSGAPPSGGPP 257
Score = 29.9 bits (64), Expect = 4.0
Identities = 23/88 (26%), Positives = 23/88 (26%), Gaps = 1/88 (1%)
Frame = +3
Query: 375 PGXFXPRGXGXXGGXXKXFXKXPLFXXXPPP-PFFXKKXPXFXXPPXGXXXKKKPPGGXX 551
PG F P G GG F PP PF P PP PP G
Sbjct: 437 PGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGP 496
Query: 552 KXXXXXGGGXXXKKPXGXXXGXXPPKXG 635
G P G P G
Sbjct: 497 PGPFNPSGAPPSGGPPGPFDPSGAPPSG 524
Score = 28.7 bits (61), Expect = 9.2
Identities = 28/106 (26%), Positives = 28/106 (26%), Gaps = 2/106 (1%)
Frame = +2
Query: 314 GXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGGXKKXXKKXPF--SXXPPPPXFXKKK 487
G PP GG G P PPG G PF S PP
Sbjct: 384 GAPP---SGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 440
Query: 488 XPFXXXPXGXXXKKKTPRGXPKXXXXXGGGAXXXKTXGGXXGGXPP 625
P P G P G P GG G G PP
Sbjct: 441 NPSGAPPSGGPPGPFNPSGAP----PSGGPPGPFNPSGAPPSGGPP 482
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.3 bits (75), Expect = 0.19
Identities = 31/124 (25%), Positives = 38/124 (30%), Gaps = 2/124 (1%)
Frame = +2
Query: 278 PPPXXKXXXX--GGGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGGXKKXXKKXPFS 451
PPP GG PPP G + P PP GG +
Sbjct: 274 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP--PQAGGSPPPAG-----T 326
Query: 452 XXPPPPXFXKKKXPFXXXPXGXXXKKKTPRGXPKXXXXXGGGAXXXKTXGGXXGGXPPKX 631
PPPP K++ P P G P G P ++ G GG P+
Sbjct: 327 GSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGG--PRG 384
Query: 632 GKXG 643
G G
Sbjct: 385 GPRG 388
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = -2
Query: 992 PPXKXXVXPPPPPXXGXXXWXPXXGGGXPXXXTRXXXXXTPPLGXXPXGGXXXXXXXXXX 813
PP PPPPP P GG P PP G P G
Sbjct: 264 PPPPRTGSPPPPPTGSPPP--PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 321
Query: 812 XXKXFXXXPPP 780
PPP
Sbjct: 322 PPAGTGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.3 bits (75), Expect = 0.19
Identities = 31/124 (25%), Positives = 38/124 (30%), Gaps = 2/124 (1%)
Frame = +2
Query: 278 PPPXXKXXXX--GGGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGGXKKXXKKXPFS 451
PPP GG PPP G + P PP GG +
Sbjct: 295 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP--PQAGGSPPPAG-----T 347
Query: 452 XXPPPPXFXKKKXPFXXXPXGXXXKKKTPRGXPKXXXXXGGGAXXXKTXGGXXGGXPPKX 631
PPPP K++ P P G P G P ++ G GG P+
Sbjct: 348 GSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGG--PRG 405
Query: 632 GKXG 643
G G
Sbjct: 406 GPRG 409
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = -2
Query: 992 PPXKXXVXPPPPPXXGXXXWXPXXGGGXPXXXTRXXXXXTPPLGXXPXGGXXXXXXXXXX 813
PP PPPPP P GG P PP G P G
Sbjct: 285 PPPPRTGSPPPPPTGSPPP--PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 342
Query: 812 XXKXFXXXPPP 780
PPP
Sbjct: 343 PPAGTGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.19
Identities = 31/124 (25%), Positives = 38/124 (30%), Gaps = 2/124 (1%)
Frame = +2
Query: 278 PPPXXKXXXX--GGGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGGXKKXXKKXPFS 451
PPP GG PPP G + P PP GG +
Sbjct: 280 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP--PQAGGSPPPAG-----T 332
Query: 452 XXPPPPXFXKKKXPFXXXPXGXXXKKKTPRGXPKXXXXXGGGAXXXKTXGGXXGGXPPKX 631
PPPP K++ P P G P G P ++ G GG P+
Sbjct: 333 GSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGG--PRG 390
Query: 632 GKXG 643
G G
Sbjct: 391 GPRG 394
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = -2
Query: 992 PPXKXXVXPPPPPXXGXXXWXPXXGGGXPXXXTRXXXXXTPPLGXXPXGGXXXXXXXXXX 813
PP PPPPP P GG P PP G P G
Sbjct: 270 PPPPRTGSPPPPPTGSPPP--PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 327
Query: 812 XXKXFXXXPPP 780
PPP
Sbjct: 328 PPAGTGSPPPP 338
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 33.1 bits (72), Expect = 0.43
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 416 PPPXPXPPGXKXPXXXFFXXXXPXPPPXXGGGG 318
PPP P PP P P PPP G GG
Sbjct: 630 PPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 662
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 33.1 bits (72), Expect = 0.43
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 416 PPPXPXPPGXKXPXXXFFXXXXPXPPPXXGGGG 318
PPP P PP P P PPP G GG
Sbjct: 456 PPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 488
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 32.3 bits (70), Expect = 0.75
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -2
Query: 1046 PKXFFFXKKXXGXGXFFXPPXKXXVXPPPPPXXGXXXWXPXXGGGXPXXXTRXXXXXTPP 867
PK FF G PP + PPPP G P GG P PP
Sbjct: 59 PKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPP 118
Score = 31.5 bits (68), Expect = 1.3
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 410 PXPXPPGXKXPXXXFFXXXXPXPPPXXGGGGXPP 309
P P PG P F P PPP GG PP
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPP 108
Score = 30.3 bits (65), Expect = 3.0
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Frame = -2
Query: 416 PPPXPXPPGXKXPXXXFFXXXXPXP----PPXXGGGGXPP 309
PP PPG P FF P P PP G GG PP
Sbjct: 47 PPSGILPPGQSIPKPSFF-IPPPVPNGFIPPPPGPGGIPP 85
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 651 GXXPXFPXLGGXPPXXPPXVFXXXAPPP 568
G P P +GG PP PP +F PPP
Sbjct: 93 GIPPPPPMMGGIPP--PPPMFGAPPPPP 118
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 32.3 bits (70), Expect = 0.75
Identities = 31/112 (27%), Positives = 34/112 (30%), Gaps = 6/112 (5%)
Frame = -2
Query: 626 WGGXPPXXP--PXFFXXXPPPXXXXXFXXPPGGFFFXXXXPGGXXKXGXFFXKKXGGGGX 453
+GG PP P F P F PP F P G G + GG G
Sbjct: 364 FGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAF----GAPQGPGGPGGYGPPPPGGPGA 419
Query: 452 XKKGXFXKXFXXP----PPXPXPPGXKXPXXXFFXXXXPXPPPXXGGGGXPP 309
G + P PP P PG P F PP G G P
Sbjct: 420 P--GSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGGNP 469
Score = 31.9 bits (69), Expect = 0.99
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 308 GGGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGG 418
GG PPP G G G P PPG G GG
Sbjct: 431 GGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGG 467
Score = 29.1 bits (62), Expect = 7.0
Identities = 29/118 (24%), Positives = 34/118 (28%), Gaps = 5/118 (4%)
Frame = +2
Query: 314 GXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGGXKKXXKKXPFSXXPPPPXFXKKKXP 493
G PPP G G P PP G ++ P S PPP
Sbjct: 319 GAPPPQ-GAPQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGN 377
Query: 494 F----XXXPXGXXXKKKTPRGXPKXXXXXGG-GAXXXKTXGGXXGGXPPKXGKXGXXP 652
F P G + G P+ GG G G PP+ G G P
Sbjct: 378 FAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGP 435
Score = 28.7 bits (61), Expect = 9.2
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +2
Query: 308 GGGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGGGXKKXXKKXPFSXXPPPPXFXKKK 487
G G PPP G + P F PP G G P PP
Sbjct: 408 GYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGG 467
Query: 488 XPFXXXP 508
PF P
Sbjct: 468 NPFARGP 474
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = -2
Query: 413 PPXPXPPGXKXPXXXFFXXXXPXPPP----XXGGGGXPPXXXXXXXXGGG 276
PP P PP + P P PPP G GG PP GG
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 346
Score = 29.1 bits (62), Expect = 7.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 967 PPPPPXGXXXFGXXXXGGGPPXKXPGV 887
PPPPP FG GG PP PG+
Sbjct: 317 PPPPPPSR--FGPPGMGGMPPPPPPGM 341
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = -2
Query: 413 PPXPXPPGXKXPXXXFFXXXXPXPPP----XXGGGGXPPXXXXXXXXGGG 276
PP P PP + P P PPP G GG PP GG
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 356
Score = 29.1 bits (62), Expect = 7.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 967 PPPPPXGXXXFGXXXXGGGPPXKXPGV 887
PPPPP FG GG PP PG+
Sbjct: 327 PPPPPPSR--FGPPGMGGMPPPPPPGM 351
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 834 SXPPPXXXXPQXGGXXXXTPGXXXGGPPPXXXXPXXXXPXGGGG 965
S P P G P G PPP P P GGGG
Sbjct: 764 SPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 834 SXPPPXXXXPQXGGXXXXTPGXXXGGPPPXXXXPXXXXPXGGGG 965
S P P G P G PPP P P GGGG
Sbjct: 764 SPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 8 protein.
Length = 373
Score = 29.9 bits (64), Expect = 4.0
Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Frame = -3
Query: 1069 GXPXGGXXXKXFFFXKXXGGXGX-----FFXPXXKXXXXPPPPPXGXXXF 935
G P GG FF GG G FF P PPPPP G F
Sbjct: 196 GGP-GGFSPLSFFLNGGLGGTGGGGNNGFFVPVPVVIPPPPPPPPGPNCF 244
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 834 SXPPPXXXXPQXGGXXXXTPGXXXGGPPPXXXXPXXXXPXGGGG 965
S P P G P G PPP P P GGGG
Sbjct: 764 SPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 834 SXPPPXXXXPQXGGXXXXTPGXXXGGPPPXXXXPXXXXPXGGGG 965
S P P G P G PPP P P GGGG
Sbjct: 764 SPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 311 GGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGG 415
GG GGG G ++ P + PGG G GG
Sbjct: 217 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGG 251
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 311 GGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGG 415
GG GGG G ++ P + PGG G GG
Sbjct: 179 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGG 213
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 311 GGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGG 415
GG GGG G ++ P + PGG G GG
Sbjct: 179 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGG 213
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 311 GGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGG 415
GG GGG G ++ P + PGG G GG
Sbjct: 217 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGG 251
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 311 GGXPPPXXGGGXXGXXXKKXXPXXFXPPGGXGXGG 415
GG GGG G ++ P + PGG G GG
Sbjct: 217 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGG 251
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = -1
Query: 969 PPPPPXXGXXXLXPXXXGGXPXXKXPXXXXXNPPXGGKXXGG 844
PPPPP L P GG P PP G G
Sbjct: 770 PPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPPPGNLLMNG 811
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = -1
Query: 969 PPPPPXXGXXXLXPXXXGGXPXXKXPXXXXXNPPXGGKXXGG 844
PPPPP L P GG P PP G G
Sbjct: 770 PPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPPPGNLLMNG 811
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 861 PQXGGXXXXTPGXXXGGPPPXXXXPXXXXPXGGGG 965
P GG P GGPPP P P GG
Sbjct: 1575 PPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGG 1609
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.155 0.538
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,016,669
Number of Sequences: 27780
Number of extensions: 436517
Number of successful extensions: 1524
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3516412346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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