Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J22
         (1357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.023
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.030
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.64 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.1 bits (77), Expect = 0.023
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -2

Query: 918 GXPPPPPPXGXXXPPXGXXXPPPP 847
           G PPPPPP     PP     PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.030
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -2

Query: 939 PXXXXXGGXPPPPPPXGXXXPPXGXXXPPPP 847
           P     GG PPPPPP G          PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -1

Query: 910 PPXPXXGXXXPPXXXXXTPPPXGXXXXXPPPP 815
           PP P  G   PP      PPP G     PPPP
Sbjct: 753 PPAPIMGGPPPP------PPPPGVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
 Frame = -2

Query: 909 PPPPPXGXXXP---PXGXXXPPPPXXXXXPPP 823
           PPPPP     P   P     PPP      PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
 Frame = -2

Query: 912 PPPPPPXGXXXPPXGXXXP-PPPXXXXXPPP 823
           PPPPPP      P     P PPP      PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 912 PPPPPPXGXXXPPXGXXXPPPPXXXXXPPP 823
           PPP P  G   PP     PPP      PPP
Sbjct: 752 PPPAPIMGGPPPPP----PPPGVAGAGPPP 777


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 16/63 (25%), Positives = 21/63 (33%)
 Frame = -3

Query: 563  PAPPXAGXXPYPPRGSPXPXXXRXTAGXGAXXXEDXGPPPIXXPXPAXGAXXPTSXXHPP 384
            P P  +G  P P      P     ++G         G PP+  P  A     P+    P 
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210

Query: 383  PXP 375
            P P
Sbjct: 1211 PPP 1213



 Score = 29.1 bits (62), Expect = 1.5
 Identities = 25/100 (25%), Positives = 32/100 (32%), Gaps = 4/100 (4%)
 Frame = -3

Query: 563  PAPPXAGXXPYPPRGSPXPXXXRXTAGXGAXXXEDXGPP-PIXX---PXPAXGAXXPTSX 396
            PA P A   P P   S  P     +A           PP PI     P P   +  P++ 
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAP 1063

Query: 395  XHPPPXPQNQXXRKDXPHXXXXLPXGEXXPPXATTSPXXP 276
              P P P ++      P     +P     PP    S   P
Sbjct: 1064 P-PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAP 1102



 Score = 28.3 bits (60), Expect = 2.6
 Identities = 18/73 (24%), Positives = 21/73 (28%)
 Frame = -1

Query: 910  PPXPXXGXXXPPXXXXXTPPPXGXXXXXPPPPKTXXRXXXKXXPXGXXAXXXPPGXXXXA 731
            PP P      PP     T PP       PP PK+         P    +    P     +
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEI-PSIPAPS 1080

Query: 730  GXXXXXXXGGXPP 692
            G        G PP
Sbjct: 1081 GAPPVPAPSGIPP 1093



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
 Frame = -2

Query: 939  PXXXXXGGXPP-PPPPXGXXXPPXGXXXPPPPXXXXXPP 826
            P      G PP PPP      P      PP P     PP
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = -2

Query: 909  PPPPPXGXXXPPXGXXXPPPPXXXXXPPPLXXKRXXGXXXXXXXPXP 769
            PP  P     P      PPPP     PPP       G       P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 912  PPPPPPXGXXXPPXGXXXPPPPXXXXXPPPL 820
            P PPPP     PP      P       PPPL
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,470
Number of Sequences: 5004
Number of extensions: 28569
Number of successful extensions: 233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 747178928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)