Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J21
         (1192 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-7|AAK85463.1|  218|Caenorhabditis elegans Hypothetical ...    59   7e-09
Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical pr...    32   0.92 
Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical pr...    32   0.92 
AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like se...    31   1.2  
AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical...    31   1.2  
U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (gr...    31   2.1  
AY255668-1|AAQ96605.1|  167|Caenorhabditis elegans MiRP5 protein.      31   2.1  
AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical ...    31   2.1  
AF098994-1|AAC67472.2|  167|Caenorhabditis elegans Hypothetical ...    31   2.1  
Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF040659-3|AAK39392.1|  919|Caenorhabditis elegans Hypothetical ...    29   6.5  
AF040659-2|AAK39393.1|  873|Caenorhabditis elegans Hypothetical ...    29   6.5  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    29   6.5  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    29   8.5  

>AC006627-7|AAK85463.1|  218|Caenorhabditis elegans Hypothetical
           protein E01A2.6 protein.
          Length = 218

 Score = 58.8 bits (136), Expect = 7e-09
 Identities = 30/75 (40%), Positives = 46/75 (61%)
 Frame = +1

Query: 583 RARTRALFTFKQVRMICERMLHDQEVALRAEYESVLSTKLAEQYEAFVRFNLDQVQRRPP 762
           R+  +  FT   V+MICER+L  QE+ LR E+E VL+ KL EQ++ +V+F  +Q+     
Sbjct: 147 RSSAKREFTMANVQMICERLLKQQEIRLRNEFEMVLTKKLDEQHQQYVQFAAEQLN---- 202

Query: 763 PSTCMSLGMDAEHMH 807
            S C+S G D  + +
Sbjct: 203 -SKCVSTGDDYSYSY 216


>Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical
           protein T21H8.1b protein.
          Length = 962

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 812 SWCMCSASIPSDMHVLGGGRRCT*SRLNLTKASYCSAS 699
           +W    A  P  +H +GG +R      N+T A YCS S
Sbjct: 436 NWSSAGAGTPRQLHPIGGNQRVN----NITSAQYCSPS 469


>Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical
           protein T21H8.1a protein.
          Length = 920

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 812 SWCMCSASIPSDMHVLGGGRRCT*SRLNLTKASYCSAS 699
           +W    A  P  +H +GG +R      N+T A YCS S
Sbjct: 436 NWSSAGAGTPRQLHPIGGNQRVN----NITSAQYCSPS 469


>AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like
           serine/threonine kinase protein.
          Length = 596

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 434 AWHKRFMMRLNDCIDVDSCAWPTA--LLHHAHHQ--VDPKETVHRLINQLMAHNVPALVH 601
           A+ K F   + DC+  D    PTA  LL ++  +   D K  VH LI  L   +VP + H
Sbjct: 354 AYGKSFKTLIRDCLQKDPAKRPTASELLKYSFFKKGKDKKYLVHTLIENLA--SVPVVAH 411

Query: 602 YS 607
           +S
Sbjct: 412 HS 413


>AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical
           protein Y59A8B.23 protein.
          Length = 596

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 434 AWHKRFMMRLNDCIDVDSCAWPTA--LLHHAHHQ--VDPKETVHRLINQLMAHNVPALVH 601
           A+ K F   + DC+  D    PTA  LL ++  +   D K  VH LI  L   +VP + H
Sbjct: 354 AYGKSFKTLIRDCLQKDPAKRPTASELLKYSFFKKGKDKKYLVHTLIENLA--SVPVVAH 411

Query: 602 YS 607
           +S
Sbjct: 412 HS 413


>U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (grd
           related) protein12 protein.
          Length = 186

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +2

Query: 665 YVLSMSLYSAPSLLNSMKPL*GSTWIRCSADPRPARACRSVWTP-NTCTRTSYPAICPN- 838
           ++L   L+SAP+       L G +   CS  P P+  C +   P  TCT  S PA C   
Sbjct: 5   FLLLFLLFSAPASA-FFNSLFGGSNCGCSCTPPPS-TCPTTCLPIMTCTPPSPPACCNTC 62

Query: 839 ---NNMRRKRGVT 868
              N  RR+R +T
Sbjct: 63  GTCNGKRRRRHLT 75


>AY255668-1|AAQ96605.1|  167|Caenorhabditis elegans MiRP5 protein.
          Length = 167

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 241 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAP 414
           KKK   +T  R+   +SK    T ++R SP     +P +SP      + PSS     + P
Sbjct: 58  KKKTKKSTKSRSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEP 117

Query: 415 VKITPERM 438
               P+++
Sbjct: 118 TPTVPDKV 125


>AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical
           protein K04F1.14b protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 552 TASSISSWPTTCPHSCTIHF*TGSYDL*AN 641
           T+SSI +WPTTC   C   + T   DL  N
Sbjct: 38  TSSSIKNWPTTCESVCGNLYLTSETDLSEN 67


>AF098994-1|AAC67472.2|  167|Caenorhabditis elegans Hypothetical
           protein T06A4.2 protein.
          Length = 167

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 241 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAP 414
           KKK   +T  R+   +SK    T ++R SP     +P +SP      + PSS     + P
Sbjct: 58  KKKTKKSTKSRSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEP 117

Query: 415 VKITPERM 438
               P+++
Sbjct: 118 TPTVPDKV 125


>Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical
           protein C34B4.2a protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 319 RCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKIT 426
           RC P A+ P+    ++  E+K +S G S + P++ T
Sbjct: 224 RCPPQASIPAYYARVRMEETKAASSGNSTAGPIRAT 259


>AF040659-3|AAK39392.1|  919|Caenorhabditis elegans Hypothetical
            protein ZK484.4a protein.
          Length = 919

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
 Frame = +1

Query: 193  KQIR*HIRKPEDFVGRKK------KMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTS 354
            +Q +  I+KPE ++   K      +++ A   R+ D  S +  P KRRR      S ++S
Sbjct: 830  RQFQSLIQKPEAYMESLKQKYIESRVSSAKRMRSNDGASTSSRPAKRRR------SNASS 883

Query: 355  PGLKTSESKPSSFGESVSAPVKI 423
            P  +T+ S  SS  +S+ +PVK+
Sbjct: 884  PKKQTASSSASS-TKSLKSPVKL 905


>AF040659-2|AAK39393.1|  873|Caenorhabditis elegans Hypothetical
            protein ZK484.4b protein.
          Length = 873

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
 Frame = +1

Query: 193  KQIR*HIRKPEDFVGRKK------KMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTS 354
            +Q +  I+KPE ++   K      +++ A   R+ D  S +  P KRRR      S ++S
Sbjct: 784  RQFQSLIQKPEAYMESLKQKYIESRVSSAKRMRSNDGASTSSRPAKRRR------SNASS 837

Query: 355  PGLKTSESKPSSFGESVSAPVKI 423
            P  +T+ S  SS  +S+ +PVK+
Sbjct: 838  PKKQTASSSASS-TKSLKSPVKL 859


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +1

Query: 316 RRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 435
           RR SPF++S ST+P +K+   + S F ES+   V  +PER
Sbjct: 220 RRRSPFSSSKSTAP-IKSRHYR-SRFSESLEDNVFRSPER 257


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 235 GRKKKMACATLKR--NLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVS 408
           G    M  ATL    NL  E K    T  +  S  AAS ST+P   T+  + S  G++  
Sbjct: 594 GNFHNMIDATLAAFDNLSVEEKIIKETNGKAASNVAASHSTAPTTTTTSGEASGGGQATI 653

Query: 409 APVKITPE 432
           +  K++PE
Sbjct: 654 SK-KMSPE 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,661,733
Number of Sequences: 27780
Number of extensions: 589048
Number of successful extensions: 1785
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1781
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3265985354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)