Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_J18
(1280 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 81 3e-16
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 75 2e-14
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 59 1e-09
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 49 1e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 49 1e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 49 1e-06
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 48 2e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 48 3e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 48 4e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 47 6e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 46 1e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 46 1e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 45 3e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 43 1e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 43 1e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 43 1e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 43 1e-04
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 3e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 6e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 6e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 40 6e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 40 0.001
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 0.001
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 0.003
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 38 0.004
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.009
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 36 0.012
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.012
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.049
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.064
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 33 0.085
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 32 0.15
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.20
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 31 0.34
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 30 0.60
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo... 27 5.6
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 9.7
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 81.0 bits (191), Expect = 3e-16
Identities = 40/85 (47%), Positives = 51/85 (60%)
Frame = +3
Query: 195 PCRSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSA 374
P V+VG++P Q+ IF GPV SF+LV D +G+PKGYGFCEY TA SA
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 375 MXNLNGYEIGGRSLXVDNACTEKSR 449
+ NLN Y+ G R L VD ++ R
Sbjct: 63 VRNLNNYDAGTRRLRVDFPTADQIR 87
Score = 39.9 bits (89), Expect = 7e-04
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 522 APEAISKAVATLPPEQMFELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVIMRIVD 701
A + + + +A L P ++ ++ +K P +A + NPQL+YA+ QA ++ R
Sbjct: 155 ANDEVYRVLAQLAPNEIDYMLSAIKALCLEAPEQAAQLFETNPQLSYAVFQAMLMKRYTS 214
Query: 702 PATAVTMLHPS 734
+ +L P+
Sbjct: 215 ESVVADLLIPA 225
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 75.4 bits (177), Expect = 2e-14
Identities = 35/73 (47%), Positives = 46/73 (63%)
Frame = +3
Query: 207 VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXNL 386
VFVG++P + Q+ IF+ VGPV +FKLV D TG KGYGFCE+ ET A+ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 387 NGYEIGGRSLXVD 425
N E+G R + V+
Sbjct: 69 NNSELGPRKIRVE 81
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/87 (26%), Positives = 44/87 (50%)
Frame = +3
Query: 441 KSRMEMQALMQGPQVENPYGDPVEPEKAPEAISKAVATLPPEQMFELMKQMKLCIQNNPN 620
KS G + NP P+ P ++ + ++T +++ ++ +++ + P
Sbjct: 192 KSSQNKGDYTSGTSISNPTSIPLAP-----SVVQVLSTFSAQELLNMLSKLQTVVHIAPE 246
Query: 621 EARNMLLQNPQLAYALLQAQVIMRIVD 701
EAR +L+ NP L YA QA ++M +VD
Sbjct: 247 EARRLLIANPALPYAAFQAMLLMNLVD 273
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 58.8 bits (136), Expect = 1e-09
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = +3
Query: 156 KVKXXRHKASWXXPCRS-VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGY 332
K++ + A PC ++VG+LP A + L +F+ +G V+ ++ ++ TG+ KG+
Sbjct: 264 KIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGF 322
Query: 333 GFCEYKXQETALSAMXNLNGYEIGGRSLXVDNA 431
G +++ + A S++ LNGY GGR L + A
Sbjct: 323 GVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 49.2 bits (112), Expect = 1e-06
Identities = 22/79 (27%), Positives = 42/79 (53%)
Frame = +3
Query: 207 VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXNL 386
+++G+L + +FS G + LV D+ TGK KG+ F +Y+ Q + + A+ N+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 387 NGYEIGGRSLXVDNACTEK 443
++ R + VD+ + K
Sbjct: 93 TNVKLLDRLVRVDHVASYK 111
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 49.2 bits (112), Expect = 1e-06
Identities = 27/84 (32%), Positives = 41/84 (48%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
+V++ +L + T + +F G + S LV D+ KP+G+GF Y E A A+
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDE 320
Query: 384 LNGYEIGGRSLXVDNACTEKSRME 455
LN E G+ L V A + R E
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREE 344
Score = 45.6 bits (103), Expect = 1e-05
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
S++VG L + T A L +F+ +GPV S ++ D T + GY + + E A+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 384 LNGYEIGGR 410
LN I GR
Sbjct: 141 LNYTLIKGR 149
Score = 45.2 bits (102), Expect = 2e-05
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
+VF+ +L A L FS G +LS K+ D G KGYGF + E+A +A+ +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEH 227
Query: 384 LNGYEIGGRSLXVDNACTEKSRM-EMQAL 467
+NG + + + V + + + R +++AL
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEAL 256
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 49.2 bits (112), Expect = 1e-06
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +3
Query: 207 VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXNL 386
+FVG +P T + + F+ G VL L+ D+ TG+P+G+GF Y+ E+A+ A +
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE-NESAVEATMSQ 307
Query: 387 NGYEIGGRSLXVDNACTEKS 446
I G+ + V A + S
Sbjct: 308 PYITIHGKPVEVKRATPKAS 327
Score = 34.3 bits (75), Expect = 0.037
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 207 VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYK 350
+F+G L T L+ F G VL ++ D TG+ +G+GF +K
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 48.4 bits (110), Expect = 2e-06
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +3
Query: 207 VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXNL 386
+++ +LP Q+ + G +LSF+L+ + A G KG+ FCE+K A A+ L
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 387 NGYEIGGRSLXVDNAC 434
+G + G L AC
Sbjct: 372 DGKDTYGNKLHAQFAC 387
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +3
Query: 207 VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXNL 386
+FV + S +L+ IFS G V +++ + T +G+GF + E A SA+ NL
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 387 NGYEIGGRSLXVDNA 431
N E GR L V A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 47.6 bits (108), Expect = 4e-06
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = +3
Query: 201 RSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMX 380
R+VFV L + T+ +L F GPV ++V D+ +G+ KG + E+ E ++ A
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAI 298
Query: 381 NLNGYEIGGRSLXVDNACTEKSRMEMQA--LMQGPQVENPY 497
L+G + G + V EK+R +A L + E P+
Sbjct: 299 ALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPF 339
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +3
Query: 180 ASWXXPCRSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQE 359
AS P + V ++ T +KAIF G + L D + KG+G+ +Y+
Sbjct: 333 ASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPI 391
Query: 360 TALSAMXNLNGYEIGGRSLXV 422
+A +A+ +NG+++ GR++ V
Sbjct: 392 SARNALEKMNGFDLAGRNMRV 412
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.8 bits (106), Expect = 6e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +3
Query: 195 PCRSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSA 374
P +VFVG+L AT L F G + S +L D +G+ KG+G+ + ++A
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC 423
Query: 375 MXNLNGYEIGGRSLXVD 425
+ +NG+ I GR +D
Sbjct: 424 V-EMNGHFIAGRPCRLD 439
Score = 43.2 bits (97), Expect = 8e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
+VFVG L L F G ++ +++ D +G+ KGYG+ +++ E A +A+
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 384 LNGYEIGGRSLXVD 425
EI GR + +D
Sbjct: 324 NGTKEIDGRMVNLD 337
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 45.6 bits (103), Expect = 1e-05
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +3
Query: 177 KASWXXPCRSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQ 356
++S P +FVG+L T A LK F VG + +L+ TGK KG+GF ++
Sbjct: 220 QSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDI 279
Query: 357 ETALSAM 377
+T + AM
Sbjct: 280 DTCMKAM 286
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +3
Query: 207 VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXNL 386
++VG LP Q++ FS GPVL ++ +R TG K Y F E++ + A +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 387 NGYEIGGRSL 416
+ Y + G+ L
Sbjct: 167 HNYLLYGKLL 176
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.8 bits (101), Expect = 3e-05
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
++FV +L L FS VGP+ +V + TG+ +GYGF + E A A
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 384 LNGYEIGGRSLXVDNACTEKSRMEM 458
L ++ GR L +D A T + R E+
Sbjct: 66 LKNKKLHGRILRLDFA-TPRKRSEV 89
Score = 32.3 bits (70), Expect = 0.15
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQE 359
+VFV +L T +L F GP+ KLV D AT + G GF +++ ++
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEK 329
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 315 GKPKGYGFCEYKXQETALSAMXNLNGYEI 401
G+ KG+GF ++ + AL A+ LNG EI
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREI 564
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/74 (31%), Positives = 41/74 (55%)
Frame = +3
Query: 201 RSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMX 380
+SV+VG++ + T +L++ F+ G V ++ D+ TG PKG+ + E+ +A+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
Query: 381 NLNGYEIGGRSLXV 422
LNG + R L V
Sbjct: 115 -LNGSMLHERPLKV 127
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +3
Query: 243 AQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXNLNGYEIGGRSLXV 422
+QL+ +FS G +LS L +G KGYGF ++ E A+ A LNG +G + + V
Sbjct: 398 SQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFV 457
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGP-VLSFKLVFDRATGKPKGYGFCEYKXQETALSAMX 380
S+FVG L + L F + P S K++ D TG + YGF + ++ A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 381 NLNGYEIGGRSLXVDNACTEKSRMEMQA 464
++ GY GR L + + + KSR + A
Sbjct: 243 HMQGYLCQGRPLRI-SVASPKSRASIAA 269
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/80 (25%), Positives = 41/80 (51%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
++++G+L T + L + GPV++ + DR G+GFCE+ ++ A
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 384 LNGYEIGGRSLXVDNACTEK 443
LN ++ G+ + V+ A ++
Sbjct: 72 LNQVKLFGKPIRVNRASQDR 91
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
++FVG+L L FS +G ++ V G+ KGYGF Y ETA +A+
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 384 LNGYEIGGRSLXVDNACTEKSRME 455
+N + + + V A + + E
Sbjct: 160 MNNQFLMNKPITVSYAFKREGKGE 183
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 41.1 bits (92), Expect = 3e-04
Identities = 26/69 (37%), Positives = 33/69 (47%)
Frame = +3
Query: 234 ATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXNLNGYEIGGRS 413
AT Q++ +F+ GPV + L DR TG KGY EY E A A+ N +
Sbjct: 21 ATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKN-LSLLDEK 79
Query: 414 LXVDNACTE 440
L VD A E
Sbjct: 80 LEVDFAFLE 88
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 40.3 bits (90), Expect = 6e-04
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 195 PCRSVFVGHLPS--AATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETAL 368
PC ++FV +L QL+ +FS G + S L +T KGYGF + A+
Sbjct: 418 PC-NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAV 476
Query: 369 SAMXNLNGYEIGGRSLXVDNACTEKSR 449
A+ LNG G + L V+ A + R
Sbjct: 477 QAINTLNGVLFGKKRLFVNYAEKREDR 503
Score = 34.7 bits (76), Expect = 0.028
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVF---DRATG--KPKGYGFCEYKXQETAL 368
S++VG+LPS ++ L +F G F ++ +++T P + F ++ + +A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 369 SAMXNLNGYEIGGRSLXVD 425
+A+ +LNG G +L V+
Sbjct: 81 NAIASLNGSSFQGNTLKVE 99
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 207 VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQET 362
+FVG+LP ++ L+ F G V S ++ D+ +G+ KGY F E+ +T
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKT 145
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 40.3 bits (90), Expect = 6e-04
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 207 VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXNL 386
V+VG+L T Q+ A+FS G + + DR T P G+ F EY + AL ++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 387 NGYEIGGRSLXVD 425
+ + R + D
Sbjct: 94 SRTSLDERIIRAD 106
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +3
Query: 195 PCRSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSA 374
P +++F+ L + ++ F+ GP+ ++V ++ TGK GY F ++ + A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 375 MXNLNGYEIGGRSLXVD 425
G + GR + VD
Sbjct: 158 YKASAGLMLNGRRIVVD 174
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 207 VFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGK----PKGYGFCEYKXQETALSA 374
VFVG L ++ ++++++F VG V + F R P G F + QE A
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 375 MXNLNGYEIGGRSLXVDNA 431
+ LNG + R + V A
Sbjct: 106 IETLNGKTLDDREIVVQKA 124
Score = 29.9 bits (64), Expect = 0.79
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 324 KGYGFCEYKXQETALSAMXNLNGYEIGGRSLXVDNACTEKSRMEMQALMQGPQVENPYGD 503
+G+GF + E A+ +NG ++G +L V +A + + Q + E +
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDK-------QNDENEKNENE 310
Query: 504 PVE-PEKAPEAIS 539
P+E E AP +S
Sbjct: 311 PIEASESAPTNVS 323
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 213 VGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXNLNG 392
V +L +L+ +F G + L D+ TG+ KG+ F Y ++ A+ A L+G
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
Query: 393 Y 395
Y
Sbjct: 266 Y 266
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.5 bits (83), Expect = 0.004
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
++++G L T A ++ +++ +G + KL+ +R TG GY F E+ A SAM +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 384 LNGYEIGG 407
+N I G
Sbjct: 153 MNNKPIPG 160
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +3
Query: 195 PCRSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSA 374
P +FV L L+ IFS G ++S +++ D+ TG Y F E+ +E+ A
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 375 MXNLNGYEIGGRSLXVD 425
+ I + VD
Sbjct: 302 YFKMQNVLIDDSRIHVD 318
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 35.9 bits (79), Expect = 0.012
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 195 PCRSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYG---FCEYKXQETA 365
PC +++VG+LP + + +LK +FS ++ + R + KG G F E++ A
Sbjct: 424 PCNTIYVGNLPPSTSEEELKVLFST-------QVGYKRLCFRTKGNGPMCFVEFENIPYA 476
Query: 366 LSAMXNLNG 392
+ A+ NL G
Sbjct: 477 MEALKNLQG 485
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 35.9 bits (79), Expect = 0.012
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 201 RSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETAL---S 371
R+V++ LP + L + G V S K + D T KGYGF ++ +++AL S
Sbjct: 296 RNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICIS 355
Query: 372 AMXNLNGYE 398
AM L GY+
Sbjct: 356 AM-TLCGYQ 363
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 33.9 bits (74), Expect = 0.049
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 198 CRSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDR 308
CR+VF+G+LP+ T +++ GP+ K+V +R
Sbjct: 205 CRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.5 bits (73), Expect = 0.064
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 327 GYGFCEYKXQETALSAMXNLNGYEIGGRSLXV 422
G+GF E+K + +A++AM +NG+ + G L +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEI 697
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.1 bits (72), Expect = 0.085
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
++ V ++P + L F +G + + G +G F + E A +
Sbjct: 203 AIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQT 262
Query: 384 LNGYEIGGRSLXVD 425
LNGYEI GR L V+
Sbjct: 263 LNGYEINGRRLRVE 276
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 32.3 bits (70), Expect = 0.15
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
++ + ++P + L +F+ + + + G +G F + E A + +
Sbjct: 233 AIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQV 292
Query: 384 LNGYEIGGRSLXVD 425
LNGYEI GR L V+
Sbjct: 293 LNGYEITGRRLRVE 306
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.9 bits (69), Expect = 0.20
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +3
Query: 204 SVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMXN 383
+V VG+L + T + L F G ++S L + + Y F E+ E A AM N
Sbjct: 7 TVHVGNLAPSVTESLLYNAFIPFGEIISVAL-HRKEKAVDRSYAFVEFDEPEDAKEAMEN 65
Query: 384 LNGYEIGGRSLXVDNA 431
+N + R + V A
Sbjct: 66 MNYSILCDRCIRVSPA 81
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.34
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +3
Query: 552 TLPPEQMFELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHP 731
+LP +++ L+ +M L + NPN+++ +L+ P L +L IM + A L
Sbjct: 309 SLPEDEICHLLTRMMLTAKPNPNDSKTLLVYVPPLRADILHQCDIMEDLGIAYGYDNLKH 368
Query: 732 SNPVPPILLPGDKPAQTN 785
+ P + KP + N
Sbjct: 369 TYPAHSVTF--GKPFEVN 384
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 30.3 bits (65), Expect = 0.60
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 201 RSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLVFDRATGKPKGYGFCEYKXQETALSAMX 380
R VFVG+L A L F G + ++V D T KG+ + ++K A+
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 381 NLNGYEI-GGRSLXVDNACTEKSR 449
LN ++ GR+L + A + K +
Sbjct: 330 -LNEKKMPEGRTLRIMRAKSTKPK 352
>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 712 QLQCFIQVTLYLQSYYRVINQ-PKRILIYHPI 804
+L+ F+Q L + YY + Q K ILI HP+
Sbjct: 89 KLRAFVQTFLAIGGYYSITTQIVKIILITHPV 120
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 201 RSVFVGHLPSAATAAQLKAIFSXVGPVLSFKLV 299
R+VF+G+LPS+ +++ F G + K++
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,719
Number of Sequences: 5004
Number of extensions: 62821
Number of successful extensions: 247
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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