Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J17
         (1290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    28   2.4  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    28   3.2  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   4.3  

>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 301 SFSPVVLRXFNG--RKHYIKVDCRRHXSTNSVSHYISLSKTDNCCSSIHSGF 450
           S+S V+    N   R++ IKV  +RH        Y+++ K   C  S H GF
Sbjct: 109 SYSTVLTATENSTKREYAIKVLDKRHIIKEKKEKYVNIEKEALCILSKHPGF 160


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +3

Query: 93  SXFLKCVICLVFFXVSSVSWCPXRLXGXFXXXXXXXXXXXXXXXWAGFCS 242
           S FLK VI ++FF V+ +  C     G +               + GFCS
Sbjct: 212 SSFLKVVIVIIFFFVAIIINCGAAPKGGYIGAHYWHHPGSFRNGFKGFCS 261


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 277 GXHGGXHCSFSPVVLRXFNGRKHYIKVDCRRH 372
           G H    C    +V+   NGR+ Y++   RRH
Sbjct: 485 GHHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,257
Number of Sequences: 5004
Number of extensions: 23326
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)