Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J16
         (1280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    29   1.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    28   3.2  

>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 450 DVLIKNLQASLKLTSDETDELTENSFSISKIADYL 554
           D  +KN++ S K   ++T+ L++++ S+ K  +YL
Sbjct: 84  DQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEYL 118


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
 Frame = +3

Query: 465 NLQASLKLTSDETDELTENSFSISKIADYLG-----GKHSNVSV----SELLQNYMKKQP 617
           NLQ  LK T     +  + +F + +  DYL       +  NV V       L+N ++K  
Sbjct: 203 NLQLQLKRTESLLQKSEDKNFKLEEKVDYLSKVNDVEQSQNVKVFTERIRFLENALEKVQ 262

Query: 618 NRKSPL-TELQMNKQESKYDSE 680
             K  L TE++ +K   + D E
Sbjct: 263 REKDSLSTEMEEDKSNKEVDYE 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,346
Number of Sequences: 5004
Number of extensions: 55186
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)