Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J16
         (1280 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    31   1.8  
AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.      31   1.8  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    31   1.8  
AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle defec...    31   1.8  
Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical pr...    31   2.3  
U56961-5|AAK39298.2|  156|Caenorhabditis elegans Hypothetical pr...    30   4.1  
AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     29   9.4  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     29   9.4  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    29   9.4  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    29   9.4  

>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 717 SRPFSYLSGESLVQSHICSLVYSFAALSVVIFYSVVSS 604
           SR +SY+ G +L +    +L+Y F  L   +F++V S+
Sbjct: 716 SRLYSYVRGHNLARRDFLALIYHFDLLLFYVFFTVFSN 753


>AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.
          Length = 529

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +3

Query: 462 KNLQASLKLTSDETDELTENSFSISKIADYLGGKHSNVSVSELLQNYMKKQPNRKSPLTE 641
           KN + +LK   DE D L E  +   +I   L  K   V   +L  +  +KQPN       
Sbjct: 283 KNSEQTLKRMEDECDRL-EKKYEACRIVFELVDKWRAVWTEKLTIDEKRKQPNYYKTTNV 341

Query: 642 LQMNKQE 662
           L  NK+E
Sbjct: 342 LPDNKRE 348


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 717 SRPFSYLSGESLVQSHICSLVYSFAALSVVIFYSVVSS 604
           SR +SY+ G +L +    +L+Y F  L   +F++V S+
Sbjct: 698 SRLYSYVRGHNLARRDFLALIYHFDLLLFYVFFTVFSN 735


>AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle
           defective protein 1 protein.
          Length = 529

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +3

Query: 462 KNLQASLKLTSDETDELTENSFSISKIADYLGGKHSNVSVSELLQNYMKKQPNRKSPLTE 641
           KN + +LK   DE D L E  +   +I   L  K   V   +L  +  +KQPN       
Sbjct: 283 KNSEQTLKRMEDECDRL-EKKYEACRIVFELVDKWRAVWTEKLTIDEKRKQPNYYKTTNV 341

Query: 642 LQMNKQE 662
           L  NK+E
Sbjct: 342 LPDNKRE 348


>Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical
           protein T23G7.4 protein.
          Length = 884

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PTDVLIKNLQASLKLTSDETDELTENSFSISKI 542
           P D+   NLQ SLK T      L EN FS++ +
Sbjct: 505 PADISRSNLQLSLKTTRSLISSLLENQFSLTHV 537


>U56961-5|AAK39298.2|  156|Caenorhabditis elegans Hypothetical
           protein T19D7.6 protein.
          Length = 156

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +3

Query: 423 GIHSAMTPTDVLIKNLQASLKLTSDETDELTENSFSISKIADY--LGGKHSNV-SVSELL 593
           G+     P+ VL KN     KLT D  + LTENSF++ K A+   L  +++ + ++  LL
Sbjct: 31  GLCLTSIPSTVL-KNRTRIEKLTLDN-NVLTENSFNMPKFANLKELSVRNNKIRNLGVLL 88

Query: 594 QNYMKKQPN 620
            N  K  PN
Sbjct: 89  ANIQKNCPN 97


>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +3

Query: 426 IHSAMTPTDVLIKNLQASLKLTS-DETDELTENSFSISKIADYLGGKHSNVSVSELLQNY 602
           I+  M    VL+     ++KLT  D   ++ +  F     + Y GG H N +V  +  NY
Sbjct: 185 INEEMDEETVLMTWEDVTIKLTDVDVMTKIGDGRFG----SVYFGGYHGNAAVRFVNMNY 240

Query: 603 MKKQPNRKSPL-TELQMNKQESKYD 674
           + ++  R     TE+    + S++D
Sbjct: 241 LSQEDRRADVFATEIVSAYKNSRHD 265


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +3

Query: 426 IHSAMTPTDVLIKNLQASLKLTS-DETDELTENSFSISKIADYLGGKHSNVSVSELLQNY 602
           I+  M    VL+     ++KLT  D   ++ +  F     + Y GG H N +V  +  NY
Sbjct: 225 INEEMDEETVLMTWEDVTIKLTDVDVMTKIGDGRFG----SVYFGGYHGNAAVRFVNMNY 280

Query: 603 MKKQPNRKSPL-TELQMNKQESKYD 674
           + ++  R     TE+    + S++D
Sbjct: 281 LSQEDRRADVFATEIVSAYKNSRHD 305


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +3

Query: 426 IHSAMTPTDVLIKNLQASLKLTS-DETDELTENSFSISKIADYLGGKHSNVSVSELLQNY 602
           I+  M    VL+     ++KLT  D   ++ +  F     + Y GG H N +V  +  NY
Sbjct: 185 INEEMDEETVLMTWEDVTIKLTDVDVMTKIGDGRFG----SVYFGGYHGNAAVRFVNMNY 240

Query: 603 MKKQPNRKSPL-TELQMNKQESKYD 674
           + ++  R     TE+    + S++D
Sbjct: 241 LSQEDRRADVFATEIVSAYKNSRHD 265


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +3

Query: 426 IHSAMTPTDVLIKNLQASLKLTS-DETDELTENSFSISKIADYLGGKHSNVSVSELLQNY 602
           I+  M    VL+     ++KLT  D   ++ +  F     + Y GG H N +V  +  NY
Sbjct: 225 INEEMDEETVLMTWEDVTIKLTDVDVMTKIGDGRFG----SVYFGGYHGNAAVRFVNMNY 280

Query: 603 MKKQPNRKSPL-TELQMNKQESKYD 674
           + ++  R     TE+    + S++D
Sbjct: 281 LSQEDRRADVFATEIVSAYKNSRHD 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,062,086
Number of Sequences: 27780
Number of extensions: 318438
Number of successful extensions: 775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)