Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J16
         (1280 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   2.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   3.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   3.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   10.0 

>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 579 VSELLQNYMKKQPNRKSPLTELQMNKQESKYDSEPVTLLKDTK 707
           + E ++  + +   RKS +TEL ++K+     S    LL++T+
Sbjct: 152 IQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMENLLQETR 194


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 579 VSELLQNYMKKQPNRKSPLTELQMNKQESKYDSEPVTLLKDTK 707
           + E ++  + +   RKS +TEL ++K+     S    LL++T+
Sbjct: 446 IQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMGNLLQETR 488


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 540 IADYLGGKHSNVSVSELLQNYMKKQPNRKSPL-TELQMNKQ 659
           +  YLGGKH    +S+ ++  M+ +   K PL  E Q+ K+
Sbjct: 106 VVKYLGGKHK--FISKKIKKTMENKDITKRPLPNESQLIKR 144


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 359 ATDVQHAGIRYFEPRRTGQXQRHTFCNDSHRCSDKE 466
           AT +Q A + YF    +G+    +  ++S   SD+E
Sbjct: 289 ATIIQFAVVHYFTKYGSGECYFSSDLSESETSSDEE 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,562
Number of Sequences: 438
Number of extensions: 3765
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43943058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)