Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J15
         (1289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    95   2e-20
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    89   1e-18
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    28   2.4  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    28   3.2  
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    27   4.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   4.3  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   5.6  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    27   5.6  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   7.4  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    27   7.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   9.8  

>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
 Frame = +2

Query: 671  YRNTQDVELQALPLLKDVPSSEQEELFIRKLRQCCVAFDFMDPVADLKGKEIKRATLNEL 850
            Y  +++  L  LP   DVP ++   L + KL QCCV FDF DP  DL GKE+KR  L +L
Sbjct: 96   YHISENRNLVRLPSFTDVPVNKWHSLALEKLEQCCVVFDFNDPSTDLYGKEVKREALQDL 155

Query: 851  VEYIHGGRGVLTEPVYPEIIKMISANLXRTL---XXXXXXXXXXXXXXXTLEASWPHLQL 1021
            ++ I   +  + E +YP I+ M + N+ R L                   LE +WPHL L
Sbjct: 156  IDLISVRKEAIDESLYPSIVHMFAVNVFRPLPPPSNPPGEIMDLEEDEPALEVAWPHLHL 215

Query: 1022 VYEFXXR 1042
            VY+F  R
Sbjct: 216  VYDFFLR 222


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
            Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
 Frame = +2

Query: 695  LQALPLLKDVPSSEQEELFIRKLRQCCVAFDFMDPVADLKGKEIKRATLNELVEYIHGGR 874
            L  LP   DV +SE+EELFI+KL QC + FDF DP +DL  KEIKR  L ++++Y+   R
Sbjct: 205  LVRLPSFDDVHTSEREELFIKKLEQCNIIFDFNDPSSDLASKEIKREALLQMIDYVSENR 264

Query: 875  GVLTEPVYPEIIKMISANLXRTLXXXXXXXXXXXXXXXT---LEASWPHLQLVY 1027
            G+ +  ++P ++   S N+ R +                   LE +WPHL+ VY
Sbjct: 265  GISSASLFPYVVNTFSLNVFRPISPALNDYSSDMFALDDEPFLEPAWPHLEEVY 318


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 51  SQQTSDDNLLLEKNYKLIASQSEKRLINFD 140
           S+ T+DDNL+  K  ++I S  E   +N D
Sbjct: 591 SEPTADDNLIPNKEAEIIQSSDEFESVNID 620


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 602 PQTFPKTFWQYESVPND*SYTVINAKDLLFP 510
           P + P  FW+Y +VPN   +  + + D + P
Sbjct: 433 PTSSPAPFWKYVAVPNPHDWPQVGSYDTISP 463


>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 794 DPVADLKGKEIKRATLNELVEYIHGGRGVLTEPVYPEIIKMISA 925
           DP   L  KEI    L  LVE+I     ++   ++P ++K + +
Sbjct: 53  DPSVPLDQKEIAFDNLEMLVEHIDNANNLVPLQLWPRLLKQLES 96


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 722 VPSSEQEELFIRKLRQCCVAFDFMDPVADLKGKEIKRATLNELVEYIHGGRGVLTEPVYP 901
           V SSE+EE  +    +   +FD  DP +   GKE   +T   ++    G R + T P  P
Sbjct: 216 VLSSEEEEENVINSSKSVPSFDLHDPFSQTFGKECPISTAPPVLNI--GDRSLETPPPIP 273


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 674 RNTQDVELQALPLLKDVPSSEQEELFIRK 760
           R T+++ +Q    LKDVPS+  ++L +++
Sbjct: 432 RRTEELRIQRAEELKDVPSARPKKLLMKR 460


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -3

Query: 855 STSSLSVARLISLPFKSATGSMKSNATQHCRSLRMNNSSCSLLGTSFNNGNACSSTS 685
           S+++ + A  +S    SAT ++   A  +  S    NSS S + TS+ +G+  S++S
Sbjct: 451 SSATGTCASYLSAAGSSATNAISLTADSNAVS---RNSSASTMSTSYTSGSGSSNSS 504


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -2

Query: 901 WINGLCKYTAATMNVLNKFIK--CSTFDLFAFQISNRIHEIKRHTTLS 764
           ++ G  ++TA   + L + ++  C T+ L   Q+++ +HE + H  LS
Sbjct: 149 FLKGSARWTAEHWDYLERRMQNFCQTYSLDHTQVADSLHEKRLHGPLS 196


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = -3

Query: 870 PP*MYSTSSLSVARLISLPFKSATGSMKSNATQHCRSLRMNNSSCSLLGTSFNNGNACSS 691
           PP    T+  ++A +      S +G   +N+T     + M NS+ S+ G + +N     S
Sbjct: 43  PPLQILTARAAMAAMNMSNDTSMSGMNMTNSTTPMSGMNMTNSTTSMSGMNMSNSTTSMS 102


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 844 IKCSTFDLFAFQISNRIHEIKRHTTLSEFTDEQFLLFTAWDIF*QW 707
           I+CS      F    + HE K+   L +   E  L  T+W +F +W
Sbjct: 644 IRCSNCKQPCFLSFMQCHEPKKFICLGDCVKEVSLNATSWMLFYRW 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,349,439
Number of Sequences: 5004
Number of extensions: 85332
Number of successful extensions: 217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)