Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_J15
(1289 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0153 - 1200121-1200465,1201693-1202920,1204517-1204602,120... 100 2e-21
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 100 3e-21
04_04_0297 - 24219497-24219853,24221242-24222414 96 6e-20
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819... 94 2e-19
05_07_0056 + 27382708-27383871,27384450-27384818 76 5e-14
03_05_0701 - 26925252-26925578,26929233-26930513 63 4e-10
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 59 9e-09
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419 50 4e-06
07_03_1016 - 23313210-23313827,23314649-23314717 29 8.0
>08_01_0153 - 1200121-1200465,1201693-1202920,1204517-1204602,
1205145-1205272,1205957-1205969
Length = 599
Score = 100 bits (240), Expect = 2e-21
Identities = 51/120 (42%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Frame = +2
Query: 698 QALPLLKDVPSSEQEELFIRKLRQCCVAFDFMDPVADLKGKEIKRATLNELVEYIHGGRG 877
+ALP L+D P+ E+ LF+RK+ C V FDF DP D+K KEIKR TL ELV+Y+ G
Sbjct: 168 EALPSLRDAPAPEKPSLFLRKVVMCYVVFDFTDPTKDVKEKEIKRQTLLELVDYVTSATG 227
Query: 878 VLTEPVYPEIIKMISANLXRT-----LXXXXXXXXXXXXXXXTLEASWPHLQLVYEFXXR 1042
EP E+IKM+S NL R ++ +WPHLQ+VYE R
Sbjct: 228 KFPEPAVQEVIKMVSTNLFRVPNPAPRENKPLESFDMEEEEPVMDPAWPHLQIVYELFLR 287
>03_06_0648 + 35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 100 bits (239), Expect = 3e-21
Identities = 50/126 (39%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 677 NTQDVELQALPLLKDVPSSEQEELFIRKLRQCCVAFDFMDPVADLKGKEIKRATLNELVE 856
N+ ++ LP KDVP++E+ LF++KL CC FDF DP +K KE+KR TL ELV+
Sbjct: 343 NSVQPTVELLPSFKDVPNTEKNNLFVKKLNLCCATFDFTDPTKSVKEKEVKRQTLLELVD 402
Query: 857 YIHGGRGVLTEPVYPEIIKMISANLXRTL----XXXXXXXXXXXXXXXTLEASWPHLQLV 1024
YI G E + EI +M+S NL RTL ++ +W HLQ+V
Sbjct: 403 YIASANGKFPEIIMQEITRMVSVNLFRTLTTPPRENKIEAFDVDDEEPVMDPAWSHLQIV 462
Query: 1025 YEFXXR 1042
YE R
Sbjct: 463 YELFLR 468
>04_04_0297 - 24219497-24219853,24221242-24222414
Length = 509
Score = 95.9 bits (228), Expect = 6e-20
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Frame = +2
Query: 698 QALPLLKDVPSSEQEELFIRKLRQCCVAFDFMDPVADLKGKEIKRATLNELVEYIHGGRG 877
+ LP KDVP+SE++ LF++K+ CC +DF DP +LK KE KR TL ELV+Y+ G
Sbjct: 74 EPLPAFKDVPASEKQNLFVKKVNLCCAVYDFADPTKNLKEKETKRQTLMELVDYVTSANG 133
Query: 878 VLTEPVYPEIIKMISANLXRT-----LXXXXXXXXXXXXXXXTLEASWPHLQLVYEFXXR 1042
+E V EI KM+S NL R+ ++ +W HLQ+VYE R
Sbjct: 134 KFSEVVMSEITKMVSINLFRSSSPTPRENKAIEGVDLEEEEPLMDPAWSHLQIVYEVFLR 193
>07_01_1111 + 10279778-10280065,10280265-10280340,10280734-10281944,
10283779-10284138
Length = 644
Score = 94.3 bits (224), Expect = 2e-19
Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Frame = +2
Query: 677 NTQDVELQALPLLKDVPSSEQEELFIRKLRQCCVAFDFMDPVADLKGKEIKRATLNELVE 856
N Q LP KDVP+SE++ L IRKL+ CC+ FDF DP +++ KE+K TL E+V+
Sbjct: 201 NLYSSSFQPLPSFKDVPNSEKQNLLIRKLKLCCIVFDFTDPTKNIQEKEMKSQTLLEIVD 260
Query: 857 YIHGGRGVLTEPVYPEIIKMISANLXRTL-----XXXXXXXXXXXXXXXTLEASWPHLQL 1021
Y+ E V EI +MISANL RTL ++ +W HLQ+
Sbjct: 261 YVVSATVKFPEIVMLEITRMISANLFRTLISPPREKKVLQAFDLEEDEAVMDPAWSHLQI 320
Query: 1022 VYE 1030
VYE
Sbjct: 321 VYE 323
>05_07_0056 + 27382708-27383871,27384450-27384818
Length = 510
Score = 76.2 bits (179), Expect = 5e-14
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Frame = +2
Query: 695 LQALPLLKDVPSSEQEELFIRKLRQCCVAFDFMDPVADLKGKEIKRATLNELVEYIHGGR 874
++ L KDVP+SE++ LF+ KL CC FDF DP K+IKR TL +L++Y+
Sbjct: 71 IEPLVSFKDVPNSEKQNLFVSKLNLCCAVFDFSDPNKSSAEKDIKRQTLLDLIDYVDSSS 130
Query: 875 GVLTEPVYPEIIKMISANLXRTL----XXXXXXXXXXXXXXXTLEASWPHLQLVYE 1030
+E V +M + NL R E +W HLQLVYE
Sbjct: 131 SRFSEAVIAASSRMFAVNLFRVFPPNYRSSSSGGGEGEEEEPMFEPAWCHLQLVYE 186
>03_05_0701 - 26925252-26925578,26929233-26930513
Length = 535
Score = 63.3 bits (147), Expect = 4e-10
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Frame = +2
Query: 695 LQALPLLKDVPSSEQEELFIRKLRQCCVAFDFMDPVADLKGKEIKRATLNELVEYIH--- 865
L+ LPLL+DV ++++ L +RKLR FDF D + + KE KR L ELV+Y+
Sbjct: 98 LEPLPLLRDVAAADRPGLLVRKLRLVAALFDFTDSLKHPREKEAKRQALLELVDYVQAPS 157
Query: 866 -----GGRGVLTEPVYPEIIKMISANLXRTLXXXXXXXXXXXXXXXT--------LEASW 1006
L E V ++ IS N+ R L L+ +W
Sbjct: 158 PAANANAPARLPENVQEALVAAISVNVFRPLPPALHESAAAIDPGAAPDDEEEPYLDPAW 217
Query: 1007 PHLQLVYEFXXR 1042
PHLQLVYE R
Sbjct: 218 PHLQLVYELLLR 229
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 58.8 bits (136), Expect = 9e-09
Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Frame = +2
Query: 707 PLLKDVPSSEQEELFIRKLRQCCVAFDFMDPVADLKGKEIKRATLNELVEYIHGGRGVLT 886
P +EE F++ + CC FDF D D KE KR L LV+ + LT
Sbjct: 63 PAAAGAEGRSREEAFVQNVNICCAVFDFSDRGKDTTEKERKRQVLMSLVDCVGAAEEPLT 122
Query: 887 EPVYPEIIKMISANLXRTLXXXXXXXXXXXXXXXT---LEASWPHLQLVYEFXXR 1042
E + ++M +ANL R + SW HLQ+VYE R
Sbjct: 123 EAMIAASVRMFAANLFRVFPPKARSGAAASETEEDEPFFDPSWYHLQVVYELLLR 177
>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
Length = 528
Score = 50.0 bits (114), Expect = 4e-06
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Frame = +2
Query: 737 QEELFIRKLRQCCVAFDFMDPVA--------DLKGKEIKRATLNELVEYIHGGRGVLTEP 892
+E++F+RKL CCV FDF A D +E KR L LV+ + LTE
Sbjct: 95 REDVFLRKLNVCCVVFDFSSAAAAAAAERGRDSPERERKRQVLVSLVDCVGAAEEPLTEA 154
Query: 893 VYPEIIKMISANLXRT----LXXXXXXXXXXXXXXXTLEASWPHLQLVYEFXXR 1042
+ ++M + NL R + + SW HLQ VYE R
Sbjct: 155 MISGCVRMFAINLFRVFPPKVRSGAAGAAEADEDEPFFDPSWYHLQAVYELLLR 208
>07_03_1016 - 23313210-23313827,23314649-23314717
Length = 228
Score = 29.1 bits (62), Expect = 8.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 560 PND*SYTVINAKDLLFPIVS*SGPVYEMNAH 468
P D +T ++ D L PI+S +GP Y + H
Sbjct: 50 PGDKCWTAVDLSDHLRPIMSFAGPFYAVTTH 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,194,959
Number of Sequences: 37544
Number of extensions: 502662
Number of successful extensions: 1083
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4015679940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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