Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J15
         (1289 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    26   0.82 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.82 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   3.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   7.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   7.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   7.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.8 bits (54), Expect = 0.82
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 618 NGSILSTNVPEDILAIRKRPKRLKLHGDQCKRFVVSDCVMIWPSIR 481
           N  +L T+V + ++ +  RP+RL    D+C R ++  C    PS R
Sbjct: 802 NKELLWTSVKKALMIVGIRPERLPSFDDECWR-LMEQCWSGEPSKR 846


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.8 bits (54), Expect = 0.82
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 618 NGSILSTNVPEDILAIRKRPKRLKLHGDQCKRFVVSDCVMIWPSIR 481
           N  +L T+V + ++ +  RP+RL    D+C R ++  C    PS R
Sbjct: 840 NKELLWTSVKKALMIVGIRPERLPSFDDECWR-LMEQCWSGEPSKR 884


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 698 VAPHLAYYDNERNPETS*SFSSV 630
           ++PH  YYD++ + ET  S++ +
Sbjct: 523 ISPHHEYYDSKSSTETPPSYNQL 545


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 424 LHEA*SNTVLRPYGKCAFISYTGPD 498
           +HE+  N +L  + +C FIS  G +
Sbjct: 106 VHESLKNVLLWDFQECTFISVNGKE 130


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 991 SRII--LFRIKIRVFTWRQGTXQICRYHFYNFWING 890
           SRI+  LF + I VF W     +  R ++YN   NG
Sbjct: 427 SRIVFPLFFLAINVFYWFAYLSRSERINYYNVNSNG 462


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 594 VPEDILAIRKRPKRLKLHGDQ 532
           +P+D+  + KRPK  K  G +
Sbjct: 30  MPDDMRTVTKRPKTKKSQGSR 50


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 698 VAPHLAYYDNERNPET 651
           ++PH  YYD++ + ET
Sbjct: 221 ISPHHEYYDSKSSTET 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,492
Number of Sequences: 438
Number of extensions: 5954
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44303247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)