Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J14
         (1421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    32   1.3  
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885...    29   6.7  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 444 PGAPAXCLPXXXPXA--KRXPP-PXPRXXYXGRRXXLPPXP 331
           P APA  LP   P A  KR PP P P     G++   PP P
Sbjct: 727 PSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPP 767


>12_02_0398 -
           18586985-18587480,18587669-18587687,18588317-18588544,
           18589699-18589966
          Length = 336

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 353 RRPXYXXRGXGGGXRXAXGXXXGRQXAGAPGXXLVENRXASLKGG 487
           RRP +  RG GG  R + G   GR+     G    + R    +GG
Sbjct: 30  RRPVHRGRGRGGRRRRSGGDATGRRRGRVSGDFPAKRRADRGRGG 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,888,320
Number of Sequences: 37544
Number of extensions: 81586
Number of successful extensions: 254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4501617904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)