Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J09
         (1278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    45   3e-05
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    44   5e-05
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    39   0.001
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    35   0.028
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    31   0.26 
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    29   1.0  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    28   3.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   5.6  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   9.7  

>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
 Frame = +3

Query: 627 EYEVERILEVHHKKNGK-REFLIHWKGWSSKFDSWEPESNLN-CSELIKKF 773
           EYEVERI++    +NG  + + I W  +SS+ D+WEP  NL+ CS ++ ++
Sbjct: 7   EYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 57



 Score = 34.3 bits (75), Expect = 0.037
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 396 YLIRWKGYSADSDTWXPEQTLS-CPELIGKF 485
           Y IRW  YS+ SDTW P + LS C  ++ ++
Sbjct: 27  YRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 57


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = +3

Query: 594 SQWDTSADENAEYEVERILEVHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSELIKK 770
           ++ +T AD    YEVE IL     KNG  E+ I W G+    ++WEPE NL  +E + K
Sbjct: 13  NEGETDADV---YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68



 Score = 31.9 bits (69), Expect = 0.20
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 360 ILDSKQLKGKLHYLIRWKGYSADSDTWXPEQTLSCPELIGK 482
           + D     G   Y I+W GY    +TW PEQ L   E + K
Sbjct: 28  LADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +3

Query: 588 AKSQWDTSADENAEYEVERILEVHH-KKNGKREFLIHWKGWSSKFD-SWEPESNLN-CSE 758
           AK +     +E  EY VE++L+    +K G  E+L+ W+G+    D +W  E++ + C +
Sbjct: 67  AKEEEGGEEEEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQ 126

Query: 759 LIKKFMDKVSSARSLDSRNLRVA 827
           LI+ + ++    R   S+  R A
Sbjct: 127 LIEAYWNE-HGGRPEPSKRKRTA 148



 Score = 30.7 bits (66), Expect = 0.45
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 384 GKLHYLIRWKGYSADSD-TWXPEQTLS-CPELI 476
           G   YL++W+GY   SD TW  E   S C +LI
Sbjct: 96  GGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLI 128


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 34.7 bits (76), Expect = 0.028
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 642 RILEVHHKKNGKR--EFLIHWKGWSSKFDSWEPESNLNCSELIKKFMDKVSSARSLDSRN 815
           R++E H         EFLI W  +S    +WEP +N++     KK  + +     LD R 
Sbjct: 200 RLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNISMIRGSKKVDNHIKQVILLD-RE 258

Query: 816 LRVAPETT 839
           +R  P TT
Sbjct: 259 IREDPTTT 266



 Score = 33.9 bits (74), Expect = 0.048
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 627 EY-EVERILEVHHKKNGKREFLIHWKGWSSKFDSWEPESNLN--CSELIKKFMDKVSSAR 797
           EY +V+RI+  H   +G  E+L+ WK     F +WE  S +    +  I+ F ++  SA 
Sbjct: 286 EYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTWEASSIIEPIAATEIQAFQEREESAL 345

Query: 798 S 800
           S
Sbjct: 346 S 346


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +3

Query: 360 ILDSKQLK--GKLHYLIRWKGYSADSD-TWXPEQTLS-CPELIGKF 485
           ILDS+  K      Y ++W+GY   SD TW  E+  + C ELI  +
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAY 226


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 684 FLIHWKGWSSKFDSWEPESNL 746
           +LIH+KGW + +D W  +  +
Sbjct: 36  YLIHYKGWKNSWDEWVEQDRI 56


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
 Frame = +3

Query: 603 DTSADENAEYEVERILE--VHHKKNGKRE---------FLIHWKGWSSKFDSWEPESNLN 749
           +   +E  E E E I++  ++H+K    +         +LI W+  S   ++WE  S L+
Sbjct: 194 EEEVEEQVEEEYEPIIDFVLNHRKRADAQDDDPKSSYQYLIKWQEVSHLHNTWEDYSTLS 253

Query: 750 CSELIKKFMDKVSSARSLDSRNLRVAPETT 839
                KK +D       +  R +R  P TT
Sbjct: 254 SVRGYKK-VDNYIKQNIIYDREIREDPTTT 282


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 778  SMNFFMSSEQFRLLSGSHESNLLDQPFQWIKNSLFPFFL*C 656
            S  F +++E   ++ GS++S    QPFQW +      FL C
Sbjct: 1765 SAPFKLTTEMIAVMGGSNKS----QPFQWFQELCVKAFLAC 1801


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +3

Query: 612 ADENAEYEVERILEVHHKKNGKREFLIHWKGWSSKFDSWEPESNLNCSELIK 767
           A ++ EY    IL +  +  G   + +H+  ++ + D W    N++ S+ I+
Sbjct: 29  AFKDGEYRKAEILMIQKRTRGV-VYYVHYNDYNKRLDEWITIDNIDLSKGIE 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,189
Number of Sequences: 5004
Number of extensions: 54147
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)