Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J09
         (1278 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    52   1e-08
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   3.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 51.6 bits (118), Expect = 1e-08
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = +3

Query: 591 KSQWDTSADENAEYEVERILEVHHKKNGKREFLIHWKGWSSKFDSWEPESNL-NCSELIK 767
           K+   T   E   +EVE+IL     K G   +LI WK W  K+++WEP SNL NCS++++
Sbjct: 231 KNGMKTLLSETDIWEVEQILAKKEIK-GVPTYLIKWKNWDLKYNTWEPISNLINCSDILE 289

Query: 768 KF 773
           +F
Sbjct: 290 EF 291



 Score = 39.5 bits (88), Expect = 6e-05
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 357 QILDSKQLKGKLHYLIRWKGYSADSDTWXP-EQTLSCPELIGKF 485
           QIL  K++KG   YLI+WK +    +TW P    ++C +++ +F
Sbjct: 248 QILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILEEF 291


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 811 RESNERALLTLSMNFFMSSEQFR-LLSGSHESNLLDQPFQWI 689
           +++N RA++      F  +E  R +L  +  SNL  QPFQW+
Sbjct: 193 KKANARAVV-----LFTRAEDARGILEAARRSNL-SQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 811 RESNERALLTLSMNFFMSSEQFR-LLSGSHESNLLDQPFQWI 689
           +++N RA++      F  +E  R +L  +  SNL  QPFQW+
Sbjct: 283 KKANARAVV-----LFTRAEDARGILEAARRSNL-SQPFQWL 318


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 693 HWKGWSSKFDSWEPESNLNCSELIKKFMDKVSSARS 800
           HW        SW   S++   E +K  +  VSS  S
Sbjct: 463 HWPMEEEPAASWGSASDVTLDEAVKSPLGSVSSTES 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,010
Number of Sequences: 438
Number of extensions: 3625
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43822995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)