Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_J07
(1296 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 198 2e-51
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.26
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 31 0.46
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 5.7
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 27 5.7
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 7.5
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 9.9
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 9.9
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 26 9.9
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 198 bits (482), Expect = 2e-51
Identities = 100/187 (53%), Positives = 134/187 (71%), Gaps = 2/187 (1%)
Frame = +2
Query: 71 VRRSSKQAVLRRIPSSXSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIY 244
V+RSS Q + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++
Sbjct: 8 VKRSSSQPT----ETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVF 63
Query: 245 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 424
VP P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT
Sbjct: 64 VPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLT 121
Query: 425 SVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGR 604
+V++AILED+VFP EI+GKR R DG + IKV LD T+++K+ +F SVY KLTG+
Sbjct: 122 AVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGK 181
Query: 605 EVTFEFP 625
VTFEFP
Sbjct: 182 NVTFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.5 bits (68), Expect = 0.26
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 413 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 589
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 590 KLTGREVTFEFP 625
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 30.7 bits (66), Expect = 0.46
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 326 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 505
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 506 SQLIKVHLD-KNQQTTIEHKV 565
S ++ LD K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 369 LGLGRILRSPTKTTCLPLNFFSSSRTS 289
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 18 YRESLRFPFPXR*SCQDESE-DHQSKRC*GGFLRVPRSRRRWSNSKPTPTSKPN 176
Y ES P R S D+ + DH+S+R R RSR R + +P+P+++ N
Sbjct: 174 YEESRLSRAPSRASRYDDDDRDHRSRRR-SRSRRPGRSRSRRRSRRPSPSAEHN 226
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 239 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 331
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 26.2 bits (55), Expect = 9.9
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -1
Query: 267 AFSLGIGT*MMIDFLLC--SSISLAFVM*SSRSWALRSELVSSSTSACEIEXLEGIRLST 94
A L +GT M + FL C +S+S A + +++S+ + L + S L RLS
Sbjct: 60 AGGLSLGTRMSMVFLACTTTSLSTAIIHWAAKSYVSEATLKGNVLSLNTFNILGKKRLSQ 119
Query: 93 ACFDDLR 73
D L+
Sbjct: 120 YTLDKLK 126
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 9.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 397 KEATLKDIDLCVRCYPRGLGLPC 465
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +3
Query: 111 LRVPRSRRRWSNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCL 257
L VP+ RRR S P+ T K GS K L S S C+C+
Sbjct: 594 LNVPKHRRRQSLFSPSSTKKKLSGSPFQPKRSFLRRLFSSEPS--CKCV 640
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,590,398
Number of Sequences: 5004
Number of extensions: 64836
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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