Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J07
         (1296 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   229   2e-60
Z81539-2|CAB04390.1|  221|Caenorhabditis elegans Hypothetical pr...    29   9.5  
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm...    29   9.5  
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm...    29   9.5  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   9.5  
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ...    29   9.5  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  229 bits (561), Expect = 2e-60
 Identities = 105/170 (61%), Positives = 139/170 (81%), Gaps = 1/170 (0%)
 Frame = +2

Query: 125 ISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVREL 304
           +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P+LKAF KI   LVREL
Sbjct: 23  VSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQLKAFHKIHPALVREL 82

Query: 305 EKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 481
           EKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA L++LV+PAE+VG+
Sbjct: 83  EKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGR 142

Query: 482 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 631
           RIRVKLDG ++ KVHLDK+ QT + HK+  F SVY+KLTG++VTFEFP+P
Sbjct: 143 RIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192


>Z81539-2|CAB04390.1|  221|Caenorhabditis elegans Hypothetical
           protein F46A8.4 protein.
          Length = 221

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 57  SCQDESEDHQSKRC*GGFLRVPRSRRRWSNSKPTPTSKP 173
           S  D SED+  +R  GG  R PR  R    S+P  T KP
Sbjct: 33  SSSDSSEDYSGRRG-GGRHRPPRPPRPPRPSRPVSTPKP 70


>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
           morphology protein1, isoform a protein.
          Length = 1117

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +3

Query: 96  C*GGFLRVPRSRRRWSNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCLN 260
           C  G+ ++  S      S PT T KP   S  L K    N +I S ++S CRCLN
Sbjct: 273 CDSGYSQIADSNGARCESCPTNTYKPKGQS--LCKSCPSN-SISSEAASSCRCLN 324


>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
           morphology protein1, isoform b protein.
          Length = 1122

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +3

Query: 96  C*GGFLRVPRSRRRWSNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCLN 260
           C  G+ ++  S      S PT T KP   S  L K    N +I S ++S CRCLN
Sbjct: 273 CDSGYSQIADSNGARCESCPTNTYKPKGQS--LCKSCPSN-SISSEAASSCRCLN 324


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 141 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 251
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
           tyrosine kinase protein.
          Length = 1122

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +3

Query: 96  C*GGFLRVPRSRRRWSNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCLN 260
           C  G+ ++  S      S PT T KP   S  L K    N +I S ++S CRCLN
Sbjct: 273 CDSGYSQIADSNGARCESCPTNTYKPKGQS--LCKSCPSN-SISSEAASSCRCLN 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,183,775
Number of Sequences: 27780
Number of extensions: 385515
Number of successful extensions: 1100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3611117266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)