Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J06
         (1392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0543 + 10427321-10428315,10428440-10429154                       31   1.6  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           31   1.6  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    31   2.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       31   2.2  
07_01_0479 + 3606663-3607448                                           30   5.0  

>09_02_0543 + 10427321-10428315,10428440-10429154
          Length = 569

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 887 PXPXRAXXPPPVXPGLXPPXGXGPXXPPXP 976
           P P  +  PPP  P + PP G GP   P P
Sbjct: 50  PAPQSSPAPPPA-PDMTPPPGPGPAAAPSP 78



 Score = 29.9 bits (64), Expect = 5.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 887 PXPXRAXXPPPVXPGLXPPXGXGPXXPPXP 976
           P P     PPP  P   PP    P  PP P
Sbjct: 18  PTPAPQATPPPAIPESGPPPPPAPDMPPPP 47


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 911 PPPVXPGLXPPXGXGPXXPPXPXXXG 988
           PPP  P    P G GP  PP P   G
Sbjct: 353 PPPAAPAAPRPPGPGPGPPPPPGAAG 378


>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 911  PPPVXPGLXPPXGXGPXXPPXPXXXGXVXP 1000
            PPP  P L PP    P  PP P   G   P
Sbjct: 1157 PPPPPPPLPPPPPVAPFHPPGPHFSGPSVP 1186


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 887 PXPXRAXXPPPVXPGLXPPX-GXGPXXPPXP 976
           P P +A  PPP   G  PP    GP  PP P
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPP 359



 Score = 30.3 bits (65), Expect = 3.8
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +2

Query: 887  PXPXRAXXPPPVXPGLXPPXGXGPXXPPXPXXXGXVXP 1000
            P P  A  PPP  P   PP       PP P   G   P
Sbjct: 319  PKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPP 356



 Score = 29.9 bits (64), Expect = 5.0
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +2

Query: 887 PXPXRAXXPPPVXPGLXPPXGX-GPXXPPXPXXXG 988
           P P +   PPP   G  PP    GP  PP P   G
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +2

Query: 911  PPPVXPGLX--PPXGXGPXXPPXPXXXGXVXP 1000
            PP V PG+   PP G  P  PP P   G   P
Sbjct: 217  PPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPP 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,886,177
Number of Sequences: 37544
Number of extensions: 219706
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4385596824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)