Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J06
         (1392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    33   0.48 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    33   0.48 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    33   0.48 
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    32   1.1  
AC084197-24|AAM44390.1|  297|Caenorhabditis elegans Collagen pro...    29   7.8  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 33.1 bits (72), Expect = 0.48
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 893 PXRAXXPPPVXPGLXPPXGXGPXXPPXP 976
           P     PPP  PG  PP   GP  PP P
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPP 764



 Score = 32.3 bits (70), Expect = 0.84
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 893 PXRAXXPPPVXPGLXPPXGXGPXXPPXP 976
           P     PPP  PG  PP   GP  PP P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPP 748


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 33.1 bits (72), Expect = 0.48
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 893 PXRAXXPPPVXPGLXPPXGXGPXXPPXP 976
           P     PPP  PG  PP   GP  PP P
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPP 764



 Score = 32.3 bits (70), Expect = 0.84
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 893 PXRAXXPPPVXPGLXPPXGXGPXXPPXP 976
           P     PPP  PG  PP   GP  PP P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPP 748


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 33.1 bits (72), Expect = 0.48
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 893 PXRAXXPPPVXPGLXPPXGXGPXXPPXP 976
           P     PPP  PG  PP   GP  PP P
Sbjct: 320 PITGGPPPPPPPGGLPPISGGPPPPPPP 347



 Score = 32.3 bits (70), Expect = 0.84
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 893 PXRAXXPPPVXPGLXPPXGXGPXXPPXP 976
           P     PPP  PG  PP   GP  PP P
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPP 331


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical protein
            T24B8.4 protein.
          Length = 866

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 911  PPPVXPG-LXPPXGXGPXXPPXPXXXGXVXP 1000
            PPPV  G + PP G G   PP P   G + P
Sbjct: 66   PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPP 96


>AC084197-24|AAM44390.1|  297|Caenorhabditis elegans Collagen
           protein 112 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +3

Query: 648 PXGTXXMPGRXPLXXPXSALXGXXPAAPRPPCXXFSPXPXVXXPXXLP 791
           P GT   PGR P     + L G     P+ PC   +P P    P   P
Sbjct: 105 PVGTPGKPGR-PGKPGVAGLPGNPGRPPQAPCDPITPPPCKPCPQGPP 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,472,807
Number of Sequences: 27780
Number of extensions: 154437
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3944130962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)