Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J05
         (1358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.49 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   7.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 415 PXPPPSPPXXXPLXPXPLPPLL 350
           P PPP PP   P    P PPL+
Sbjct: 3   PAPPPPPPAPAPAAAAPAPPLM 24


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 421 PXPXPPPSPPXXXPLXPXPLPPLL 350
           P P PP  PP   P  P   PP L
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSL 439


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 424 SPXPXPPPSPPXXXPLXPXPLPPLLXHXP 338
           +P P PPP+P    P  P P P +    P
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGP 775



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 415 PXPPPSPPXXXPLXPXPLPP 356
           P PPP PP      P P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 415 PXPPPSPPXXXPLXPXPLPP 356
           P PPP PP   P    P PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 415 PXPPPSPPXXXPLXPXPLPP 356
           P PPP P    P  P P PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,744
Number of Sequences: 5004
Number of extensions: 12379
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 749166106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)