Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J05
         (1358 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    34   0.27 
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    33   0.35 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   3.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   3.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   3.3  
AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    29   5.7  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 33.9 bits (74), Expect = 0.27
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 421 PXPXPPPSPPXXXPLXPXPLPPLLXHXPIXS 329
           P   PPP PP   P+ P P PP+  + P  S
Sbjct: 59  PPMCPPPPPPPPPPMCPPPPPPMPSYSPCQS 89



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 421 PXPXPPPSPPXXXPLXPXPLPP 356
           P P PPP PP   P  P P PP
Sbjct: 27  PPPCPPPPPPMCAP-PPLPCPP 47


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 424  SPXPXPPPSPPXXXPLXPXPLPP 356
            SP P PPP PP    L P P PP
Sbjct: 1337 SPPPPPPPPPPPSDDLTPVPPPP 1359


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 424 SPXPXPPPSPPXXXPLXPXPLPP 356
           S  P PPP PP   P  P P PP
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPPPP 777


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 424 SPXPXPPPSPPXXXPLXPXPLPP 356
           S  P PPP PP   P  P P PP
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPPPP 777


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 424 SPXPXPPPSPPXXXPLXPXPLPP 356
           S  P PPP PP   P  P P PP
Sbjct: 338 SGGPPPPPPPPGGCPPPPPPPPP 360


>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 421 PXPXPPPSPPXXXPLXPXPLPPL 353
           P P PP  PP   P  P P PP+
Sbjct: 316 PCPSPPLLPPVCPPAPPPPPPPI 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,936,435
Number of Sequences: 27780
Number of extensions: 112820
Number of successful extensions: 1252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3829657504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)