Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J04
         (1269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   4.2  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    27   4.2  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   5.5  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   5.5  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    27   7.3  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 712  YVRYTNPNLRV*LSMTSLYTFITKK 786
            Y+RY NP+LR  +   + Y F+T++
Sbjct: 988  YLRYGNPSLRYSVMFLASYCFVTRR 1012


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 141 CAWATTASAAKKERGPMDAIXALCARDRAAXNKTRKMKE 25
           C W+      K E GP+        +D+A   K R MK+
Sbjct: 578 CCWSKIIHIQKLENGPLKTFGPTQIKDKARLIKARFMKQ 616


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 410 RPDVQMYFXLSWTIRALTHSFSSL 339
           + D+Q YF LSW I    H  S +
Sbjct: 183 KADIQCYFALSWLITWFAHDVSDI 206


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 178 LLCVSSATSMXRSADNKGSFFSWRXPALRGVEAAW---LSASNYCRQRCMDLVSLEPSDE 348
           LL  SS   + +SA N      W  P L    + +   +SA +    +C+D+++L P ++
Sbjct: 237 LLTSSSGQKLGKSAGNA----IWLDPKLTDSYSLYQYFISAPDDLACKCLDMLTLLPLEQ 292

Query: 349 NEWVKARIVQDKXKYI 396
            E +KA   +D  + I
Sbjct: 293 LEQIKAEHEKDPSQRI 308


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +1

Query: 316 MDLVSLEPSDENEWVK-ARIVQDKXK---YIWTSGRLCDFKGCNRPDLLPNEINGWFWTA 483
           MDLV    SD++EW K +R  +   K   Y W   R  + KG   P   PN    +F T+
Sbjct: 105 MDLVLNHTSDQHEWFKESRSSKTNPKRDWYFWKPARYNE-KGERLP---PNNWRSYFDTS 160

Query: 484 ELQKLAPTTNRQQNDWSEG 540
             +    T     + WS G
Sbjct: 161 AWEWDEATQEYYLHLWSVG 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,801,861
Number of Sequences: 5004
Number of extensions: 72808
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)