Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_J04
(1269 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 32 0.84
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 31 2.6
04_04_1503 + 34031540-34031562,34031682-34032212,34032417-340325... 30 3.4
12_02_0046 + 12830974-12832386 30 4.5
04_03_0372 + 15068405-15070000 30 4.5
07_01_1088 + 9995442-9997736 29 5.9
05_05_0290 - 23879064-23880035 29 5.9
03_01_0226 + 1795120-1795686,1796040-1796171 29 5.9
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674... 29 7.8
08_02_0830 - 21617485-21618198 29 7.8
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 7.8
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 29 7.8
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 32.3 bits (70), Expect = 0.84
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 185 QRRHRRRPGDGHWGTVPGPPPRAQRRKN-EDRWMQXARCVPETGLPATKRG 36
+R RRP P PP + R+N E M ++CV G PA K+G
Sbjct: 9 RRARARRPFAVLAAAAPPPPSAGRNRENVEGEAMSFSQCVRRFGKPAAKKG 59
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 30.7 bits (66), Expect = 2.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 590 PPCISSRLSGCGFPMPPPSDQSFC 519
PP S + S CG +PP S Q FC
Sbjct: 615 PPRPSQQFSACGTMLPPSSSQPFC 638
>04_04_1503 +
34031540-34031562,34031682-34032212,34032417-34032571,
34032929-34033020,34033916-34034419
Length = 434
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -2
Query: 215 ERXMDVALDTQR----RHRRRPGDGHWGTVPGPPPRAQRR-KNE 99
++ M ALD R R + R + W T+ GPP RA RR KN+
Sbjct: 299 KQRMSTALDCDRTDARRSKTRGRNDRWMTIRGPPRRATRRQKNQ 342
>12_02_0046 + 12830974-12832386
Length = 470
Score = 29.9 bits (64), Expect = 4.5
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 7 PAPTRAF-FHLPRFVAGSPVSGTQRANCIHRSSFF 108
P+P ++LPR +AG P T+ +CIHR++ +
Sbjct: 17 PSPEEVVTYYLPRLIAGHPPKDTE--SCIHRANVY 49
>04_03_0372 + 15068405-15070000
Length = 531
Score = 29.9 bits (64), Expect = 4.5
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 8/113 (7%)
Frame = -1
Query: 315 AALSAVVACAQPGCFDAAERWXPPREEGAFIV--SGARHGCXAGHTK----KAPEAXRRR 154
A +A P C DA E PP ++V SG G G T+ + P+A R
Sbjct: 232 APTTAETELPAPSCDDAVETVLPPINGEVYVVTTSGYTLGLRLGTTRFSVVELPDAARSS 291
Query: 153 PLGNCAWATTASAAKKE--RGPMDAIXALCARDRAAXNKTRKMKEGPSRGGXG 1
AW+ A+A + RG + + R KT M++ G G
Sbjct: 292 ANFRMAWSYAAAADDDDFARGRLCLVHGDGTRLSIWHRKTTTMEDDGGAAGVG 344
>07_01_1088 + 9995442-9997736
Length = 764
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +1
Query: 592 ASEHCVAILNNFYNDGVHWHDVACHHRKPFVCEENDALLKYVRYTNPNLRV*LSMTSLYT 771
A+ C+ + N W + + HH+ C E + Y+ + NP + + + +L+T
Sbjct: 519 ATTMCIERSSGLNNRCPTWCEKSIHHKNAVQCREMSNYMTYLLFVNPEMLMPGTRRNLFT 578
>05_05_0290 - 23879064-23880035
Length = 323
Score = 29.5 bits (63), Expect = 5.9
Identities = 23/87 (26%), Positives = 34/87 (39%)
Frame = +1
Query: 280 WLSASNYCRQRCMDLVSLEPSDENEWVKARIVQDKXKYIWTSGRLCDFKGCNRPDLLPNE 459
WL + C +L S E D NE V+D + + G + NRP +
Sbjct: 229 WLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNRPWAIVPW 288
Query: 460 INGWFWTAELQKLAPTTNRQQNDWSEG 540
+N F T E Q + QQ+ + G
Sbjct: 289 LNELFSTREAQNAGGVSTDQQSPHTSG 315
>03_01_0226 + 1795120-1795686,1796040-1796171
Length = 232
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 215 ERXMDVALDTQRRHRRRPGDGHWGTVPGPPPRAQRRKNED 96
ER D + R R + +W GP R+ RR+ ED
Sbjct: 16 ERRSAAEADRRDRDARAKEEAYWQAAEGPKSRSARRREED 55
>10_08_0851 -
21065832-21065948,21066361-21066705,21067181-21067489,
21067574-21067648,21067754-21067917,21067994-21068432
Length = 482
Score = 29.1 bits (62), Expect = 7.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 122 RAQRRKNEDRWMQXARCVPETGLPATKR 39
R +NEDRW CVP+ G+ R
Sbjct: 262 RRSTHRNEDRWWLPVPCVPDGGISGKAR 289
>08_02_0830 - 21617485-21618198
Length = 237
Score = 29.1 bits (62), Expect = 7.8
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -1
Query: 285 QPGCFDAAERWXPPREEGAFIVSGARHGCXAGHTKKAPEAXRRRPLGN-CAWATTASAAK 109
+PG DA ERW +E G+ S + +G +A R N A + AS++
Sbjct: 55 KPGRADAVERWDARKEAGSSAASSSSSSSSSGLPCRADSCERWDAHKNKKAGGSAASSSS 114
Query: 108 KERG 97
+ RG
Sbjct: 115 RARG 118
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 188 TQRRHRRRPGDGHWGTVPGPPPRAQRRKNE 99
+QR +R GD H + PPP+ R K E
Sbjct: 149 SQRAKKRSIGDDHADDIEEPPPKRSRSKQE 178
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 725 VYLTYLRRASFSSQTNGLRWWQATS 651
V L + +SFSS NG+++WQ TS
Sbjct: 597 VVLPSISVSSFSSHNNGIKFWQPTS 621
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,890,230
Number of Sequences: 37544
Number of extensions: 587910
Number of successful extensions: 2053
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2051
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3934202376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -