Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_J04
(1269 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M93221-1|AAA60389.1| 1456|Homo sapiens mannose receptor protein. 33 2.2
J05550-1|AAA59868.1| 1456|Homo sapiens M6PR protein. 33 2.2
DQ663787-1|ABG47462.1| 1456|Homo sapiens mannose receptor protein. 33 2.2
BX255924-1|CAI15339.1| 1456|Homo sapiens mannose receptor, C typ... 33 2.2
AL928729-2|CAH70733.1| 1456|Homo sapiens mannose receptor, C typ... 33 2.2
AL928580-1|CAH71176.1| 1456|Homo sapiens mannose receptor, C typ... 33 2.2
AL139238-2|CAH70872.1| 1456|Homo sapiens mannose receptor, C typ... 33 2.2
AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein. 32 3.9
AC005254-1|AAC25581.1| 315|Homo sapiens PGCN_HUMAN, PARTIAL CDS... 32 3.9
AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein p... 32 3.9
M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartila... 31 6.7
>M93221-1|AAA60389.1| 1456|Homo sapiens mannose receptor protein.
Length = 1456
Score = 33.1 bits (72), Expect = 2.2
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +1
Query: 529 WSEGGGI-----GKPQPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCE 690
W++G G+ GK P R CV I+ N+ W D C ++ ++C+
Sbjct: 1022 WTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ 1080
>J05550-1|AAA59868.1| 1456|Homo sapiens M6PR protein.
Length = 1456
Score = 33.1 bits (72), Expect = 2.2
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +1
Query: 529 WSEGGGI-----GKPQPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCE 690
W++G G+ GK P R CV I+ N+ W D C ++ ++C+
Sbjct: 1022 WTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ 1080
>DQ663787-1|ABG47462.1| 1456|Homo sapiens mannose receptor protein.
Length = 1456
Score = 33.1 bits (72), Expect = 2.2
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +1
Query: 529 WSEGGGI-----GKPQPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCE 690
W++G G+ GK P R CV I+ N+ W D C ++ ++C+
Sbjct: 1022 WTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ 1080
>BX255924-1|CAI15339.1| 1456|Homo sapiens mannose receptor, C type
1-like 1 protein.
Length = 1456
Score = 33.1 bits (72), Expect = 2.2
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +1
Query: 529 WSEGGGI-----GKPQPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCE 690
W++G G+ GK P R CV I+ N+ W D C ++ ++C+
Sbjct: 1022 WTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ 1080
>AL928729-2|CAH70733.1| 1456|Homo sapiens mannose receptor, C type 1
protein.
Length = 1456
Score = 33.1 bits (72), Expect = 2.2
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +1
Query: 529 WSEGGGI-----GKPQPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCE 690
W++G G+ GK P R CV I+ N+ W D C ++ ++C+
Sbjct: 1022 WTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ 1080
>AL928580-1|CAH71176.1| 1456|Homo sapiens mannose receptor, C type
1-like 1 protein.
Length = 1456
Score = 33.1 bits (72), Expect = 2.2
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +1
Query: 529 WSEGGGI-----GKPQPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCE 690
W++G G+ GK P R CV I+ N+ W D C ++ ++C+
Sbjct: 1022 WTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ 1080
>AL139238-2|CAH70872.1| 1456|Homo sapiens mannose receptor, C type
1-like 1 protein.
Length = 1456
Score = 33.1 bits (72), Expect = 2.2
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +1
Query: 529 WSEGGGI-----GKPQPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCE 690
W++G G+ GK P R CV I+ N+ W D C ++ ++C+
Sbjct: 1022 WTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ 1080
>AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein.
Length = 1321
Score = 32.3 bits (70), Expect = 3.9
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 559 QPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCEENDAL 705
QPDN GG E CV ++ + + W+DV C++ P+VC++ L
Sbjct: 1173 QPDN--FFAGG--EDCVVMVAH---ESGRWNDVPCNYNLPYVCKKGTVL 1214
>AC005254-1|AAC25581.1| 315|Homo sapiens PGCN_HUMAN, PARTIAL CDS
protein.
Length = 315
Score = 32.3 bits (70), Expect = 3.9
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 559 QPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCEENDAL 705
QPDN GG E CV ++ + + W+DV C++ P+VC++ L
Sbjct: 167 QPDN--FFAGG--EDCVVMVAH---ESGRWNDVPCNYNLPYVCKKGTVL 208
>AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein
protein.
Length = 1335
Score = 32.3 bits (70), Expect = 3.9
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 559 QPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCEENDAL 705
QPDN GG E CV ++ + + W+DV C++ P+VC++ L
Sbjct: 1187 QPDN--FFAGG--EDCVVMVAH---ESGRWNDVPCNYNLPYVCKKGTVL 1228
>M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartilage
proteoglycan core protein protein.
Length = 2316
Score = 31.5 bits (68), Expect = 6.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 559 QPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCEENDA 702
QPDN A E CV ++ +++ W+DV C++ PF C++ A
Sbjct: 2252 QPDNFF----AAGEDCVVMI---WHEKGEWNDVPCNYHLPFTCKKGTA 2292
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,020,332
Number of Sequences: 237096
Number of extensions: 3192872
Number of successful extensions: 7967
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7963
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18165255900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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