Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J04
         (1269 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   3.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   5.7  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   7.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   7.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   9.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 227  LLSAERXMDVALDTQRRHRRRPGDGHWGTVPGPP 126
            LL     MD +   Q +    PG+GH GT+ GPP
Sbjct: 1730 LLGFREEMDPSKAMQFQTFPHPGNGHSGTM-GPP 1762


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
 Frame = +1

Query: 322 LVSLEPSDENEWVKARIVQDKXKYIWTSGRLCDF-KGCNRP-----DLLPNEINGWFWTA 483
           L+     ++ EW K     +     W      +F KG N       D+  N +N W WT 
Sbjct: 17  LLDTTQEEKLEWTKYPFGAEANTPGWVEESFTNFDKGINWRSYVVCDVAYNNVNNWLWTP 76

Query: 484 ELQK 495
            +++
Sbjct: 77  FIER 80


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +2

Query: 338 PAMKMNGSKRVLSRTX*STFGHRAVFVTSKDATDLTYYLTK*TVGSGLLSCRSWLPPPTV 517
           P  ++ G ++  S    ST  +  +    +    + YYL +  + SGL+   SW+    +
Sbjct: 186 PQFRVLGHRQRHSTIHLSTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWV-SFWL 244

Query: 518 NRTTGPKVAALENRNLIT 571
           NR   P   AL    ++T
Sbjct: 245 NRNATPARVALGVTTVLT 262


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 804 LIIKLKLFGYKSIK*SHRQLNS*VRIGISDVFEEGVVFFA 685
           +II+L   G   I    R L    ++  +D F EGV+  A
Sbjct: 22  VIIQLPFCGPNVIDHYFRDLQPLFKLACTDTFMEGVIVLA 61


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 454 NEINGWFWTAELQKLA 501
           NE+N W+W  ++  L+
Sbjct: 361 NEMNKWWWNMKISNLS 376


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +1

Query: 646 WHDVACHHRKPFVCEENDALLKYVRYTNP 732
           W  +  HH    VC  ND  +     T+P
Sbjct: 122 WLQMTKHHNFIKVCSVNDVNMTITELTDP 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,512
Number of Sequences: 438
Number of extensions: 6184
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43462806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)