Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J03
         (1300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    33   0.44 
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    33   0.44 
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    32   0.77 
L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    31   2.3  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   2.3  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   2.3  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   2.3  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   5.4  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    29   7.2  
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr...    29   9.5  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   9.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   9.5  

>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 19/61 (31%), Positives = 19/61 (31%)
 Frame = -2

Query: 645 RGXXXPPPPXFXGXXXPXXXXPXXXFFXXXPPXXXXXXXXXXXXXXPFXXXPFFXXPPXF 466
           RG   PPPP F G   P    P    F   PP                   PFF  PP  
Sbjct: 301 RGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGG-PYPPFFPPPPPH 359

Query: 465 F 463
           F
Sbjct: 360 F 360


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 19/61 (31%), Positives = 19/61 (31%)
 Frame = -2

Query: 645 RGXXXPPPPXFXGXXXPXXXXPXXXFFXXXPPXXXXXXXXXXXXXXPFXXXPFFXXPPXF 466
           RG   PPPP F G   P    P    F   PP                   PFF  PP  
Sbjct: 301 RGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGG-PYPPFFPPPPPH 359

Query: 465 F 463
           F
Sbjct: 360 F 360


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 32.3 bits (70), Expect = 0.77
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +2

Query: 155 PPPPPXXXGXKKXGGGGXXXXXXGFXGXXFXGGG 256
           PPPPP   G    GGGG      G  G    GGG
Sbjct: 55  PPPPPACGGGCGGGGGGCGGGGGGCGGGGGCGGG 88



 Score = 32.3 bits (70), Expect = 0.77
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +2

Query: 155 PPPPPXXXGXKKXGGGGXXXXXXGFXGXXFXGGG 256
           PPPPP   G    GGGG      G  G    GGG
Sbjct: 112 PPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGG 145



 Score = 31.9 bits (69), Expect = 1.0
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +2

Query: 155 PPPPPXXXGXKKXGGGGXXXXXXGFXGXXFXGGG 256
           PPPPP   G    GGGG      G  G    GGG
Sbjct: 111 PPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGG 144


>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
           protein 1, isoform b protein.
          Length = 737

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = +3

Query: 507 GGGGXPXXGGGGXXXGGXXKKXFXGGPXNXXXXXXKXXGGG 629
           GGGG    GGGG   GG       GG  N         GGG
Sbjct: 52  GGGGGGGGGGGGGGFGGGNGGFGGGGGGNYGGGGGNQGGGG 92


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = -3

Query: 641 GXXXPPPPXFXGXXXXVXXXPXKXFFXXXPXXXPPPPXXGXXPPPXFXXXXFFXPPP 471
           G   PPPP   G        P        P   PPPP  G  PPP         PPP
Sbjct: 251 GSGSPPPPPAAGSPPP----PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = -3

Query: 641 GXXXPPPPXFXGXXXXVXXXPXKXFFXXXPXXXPPPPXXGXXPPPXFXXXXFFXPPP 471
           G   PPPP   G        P        P   PPPP  G  PPP         PPP
Sbjct: 272 GSGSPPPPPAAGSPPP----PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = -3

Query: 641 GXXXPPPPXFXGXXXXVXXXPXKXFFXXXPXXXPPPPXXGXXPPPXFXXXXFFXPPP 471
           G   PPPP   G        P        P   PPPP  G  PPP         PPP
Sbjct: 257 GSGSPPPPPAAGSPPP----PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = -3

Query: 641 GXXXPPPPXFXGXXXXVXXXPXKXFFXXXPXXXPPPPXXGXXPPP 507
           G   PPPP F G        P        P   PPPP  G  PPP
Sbjct: 81  GGIPPPPPMFAGGIP-----PPPPMMGGIP---PPPPMFGAPPPP 117



 Score = 29.1 bits (62), Expect = 7.2
 Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
 Frame = -3

Query: 581 PXKXFFXXXPXXX---PPPPXXGXXPPPXFXXXXFFXPPPFFXG 459
           P   FF   P      PPPP  G  PPP         PPP   G
Sbjct: 59  PKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMG 102


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +2

Query: 155 PPPPPXXXGXKKXGGGGXXXXXXGFXGXXFXGGG 256
           PPPPP        GGG       G  G  + GGG
Sbjct: 307 PPPPPPAPAPVSSGGGYSEQSSGGGGGSSYSGGG 340


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +2

Query: 155 PPPPPXXXGXKKXGGGGXXXXXXGFXGXXFXGGG 256
           PPPPP        GGG       G  G  + GGG
Sbjct: 307 PPPPPPAPAPVSSGGGYSEQSSGGGGGSSYSGGG 340


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +3

Query: 507 GGGGXPXXGGGGXXXGGXXKKXFXGGPXNXXXXXXKXXGGG 629
           GGGG    GG G   GG       GG  N         GGG
Sbjct: 60  GGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGG 100


>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
           protein R08B4.1b protein.
          Length = 1160

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +3

Query: 507 GGGGXPXXGGGGXXXGGXXKKXFXGGPXNXXXXXXKXXGGG 629
           GGGG     GGG   GG       GG  N         GGG
Sbjct: 789 GGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGG 829


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = -3

Query: 641 GXXXPPPPXFXGXXXXVXXXPXKXFFXXXPXXXPPPPXXGXXPPPXFXXXXFFXPPP 471
           G   PPPP        +   P   +    P   PPPP      PP         PPP
Sbjct: 331 GGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = -3

Query: 641 GXXXPPPPXFXGXXXXVXXXPXKXFFXXXPXXXPPPPXXGXXPPPXFXXXXFFXPPP 471
           G   PPPP        +   P   +    P   PPPP      PP         PPP
Sbjct: 341 GGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.157    0.542 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,613
Number of Sequences: 27780
Number of extensions: 248167
Number of successful extensions: 1409
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3621523944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)