Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J02
         (1244 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   159   3e-41
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   2.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   2.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   4.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   6.3  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   6.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   6.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  159 bits (387), Expect = 3e-41
 Identities = 79/141 (56%), Positives = 102/141 (72%), Gaps = 1/141 (0%)
 Frame = +2

Query: 479 DNEIGENG-ETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIE 655
           D + G+ G E KK   Y+PPE  N E ++F+S I++G+NF K D I VKV+G + P PI 
Sbjct: 100 DGDRGDGGGEEKKREFYIPPEVENVE-DLFTSGITTGVNFMKLDEIEVKVTGNDAPPPIT 158

Query: 656 SFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIIN 835
           SFET+ LR ++L+NV K+GY KPT IQK AIP+I+SGRDLM CAQTGSGKTAAF++PII+
Sbjct: 159 SFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIH 218

Query: 836 MLLQDPKDLISXNGCAXPQVI 898
            LL D     + N CA P V+
Sbjct: 219 NLLSDKNPPNTENNCAQPVVV 239



 Score = 46.4 bits (105), Expect = 4e-07
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = +1

Query: 898  IXSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTA 1002
            I SPTREL +QI ++ +KF+Y S +KVA  YGGT+
Sbjct: 240  IMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTS 274


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 470 DYEDNEIGENGETKKP 517
           D ++N+ G NGE KKP
Sbjct: 462 DSKNNQDGNNGEKKKP 477


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 470 DYEDNEIGENGETKKP 517
           D ++N+ G NGE KKP
Sbjct: 354 DSKNNQDGNNGEKKKP 369


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 158 PPPPLQNHDSVXEGHSLSXGXGFPSFNEDDEK 253
           P P +  H+        + G GFP  + D+++
Sbjct: 332 PRPNIDRHEVTRPAAPANRGNGFPKRSSDEQQ 363


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 59  YCLAPSRCRSPVKIKNPIVMDXXWXXSCEAV 151
           YC A         I NPI +   W  + EA+
Sbjct: 310 YCAATKNPNFDKMIGNPICVQIPWDKNAEAL 340


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 473 YEDNEIGENGETKKPVTYVPPEP-TNDETEIFSSTISSGI 589
           Y+DN   +NG  K PV ++  E  T+     +S   S G+
Sbjct: 643 YQDNVYCKNGGGKLPVRWMALESLTHQRYTTYSDVWSFGV 682


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 751 WDCIFLNRCGFS 716
           W C  +NRC FS
Sbjct: 736 WICTLMNRCKFS 747


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,228
Number of Sequences: 336
Number of extensions: 3680
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36480155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)