Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_J02
(1244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 108 2e-24
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 77 5e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 75 2e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 75 3e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 74 4e-14
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 73 1e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 68 2e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 64 3e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 64 3e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 4e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 62 2e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 61 4e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 61 4e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 58 3e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 58 3e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 55 2e-08
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 54 3e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 53 7e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 53 7e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 53 7e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 1e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 33 0.11
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 30 0.77
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 1.8
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 28 3.1
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 27 4.1
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 27 4.1
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 27 4.1
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 7.2
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 9.5
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 26 9.5
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 108 bits (259), Expect = 2e-24
Identities = 48/88 (54%), Positives = 67/88 (76%)
Frame = +2
Query: 575 ISSGINFDKFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPI 754
+S+GINF+K+D I V+VSG + P+ F + L ++L N+ +GY +PTP+QKN+IPI
Sbjct: 144 VSTGINFEKYDDIPVEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPI 202
Query: 755 IMSGRDLMGCAQTGSGKTAAFLVPIINM 838
+ SGRDLM CAQTGSGKTA FL PI+++
Sbjct: 203 VTSGRDLMACAQTGSGKTAGFLFPILSL 230
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 889 TGYIXSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAVPIKV 1017
T I +PTREL QI E RKF Y S ++ YGG + ++
Sbjct: 257 TTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQI 299
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 77.0 bits (181), Expect = 5e-15
Identities = 34/72 (47%), Positives = 48/72 (66%)
Frame = +2
Query: 617 VKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTG 796
+ V G N P+P+ +FE A YVL V + G+ PTPIQ+ A P+ MSGRD++G + TG
Sbjct: 110 IVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATG 169
Query: 797 SGKTAAFLVPII 832
SGKT ++ +P I
Sbjct: 170 SGKTLSYCLPAI 181
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 898 IXSPTRELTLQIFNEXRKFSYGSXLKVAXAYGG 996
+ +PTREL +QI E KF S ++ YGG
Sbjct: 200 VLAPTRELAVQIQQECTKFGKSSRIRNTCVYGG 232
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 74.9 bits (176), Expect = 2e-14
Identities = 30/72 (41%), Positives = 52/72 (72%)
Frame = +2
Query: 617 VKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTG 796
+ + G++ P P+ ++E A L +L + K Y++P+ IQ+ AIP+++ +DL+G A+TG
Sbjct: 237 ISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETG 296
Query: 797 SGKTAAFLVPII 832
SGKTAAF++P+I
Sbjct: 297 SGKTAAFIIPLI 308
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 74.5 bits (175), Expect = 3e-14
Identities = 36/87 (41%), Positives = 53/87 (60%)
Frame = +2
Query: 617 VKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTG 796
+K+ G + P+P+ S+ L + + GY KPT IQ AIP I SGRD++G A+TG
Sbjct: 406 IKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTG 465
Query: 797 SGKTAAFLVPIINMLLQDPKDLISXNG 877
SGKT AFL+P+ ++D + L + G
Sbjct: 466 SGKTIAFLLPMFRH-IKDQRPLKTGEG 491
Score = 34.7 bits (76), Expect = 0.027
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 898 IXSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAVPIKVITL 1026
I +PTREL +QIF E + F ++ AYGG + ++ L
Sbjct: 496 IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADL 538
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 74.1 bits (174), Expect = 4e-14
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 10/140 (7%)
Frame = +2
Query: 467 NDYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDH--IAVK----VS 628
N+ E ++ E + +T P N T+ F+S ++G + + D IA K
Sbjct: 187 NEDESSQDESESEEEDDITEPVPSFANISTQDFNSDSAAGSSDSEEDEEEIAKKNAFFAE 246
Query: 629 GENPPRPI----ESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTG 796
G+ + SF++ NL + +L + G+ PT IQ IP+ + G+D++G A TG
Sbjct: 247 GDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTG 306
Query: 797 SGKTAAFLVPIINMLLQDPK 856
SGKTAAF+VPI+ LL PK
Sbjct: 307 SGKTAAFIVPILERLLYRPK 326
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 72.5 bits (170), Expect = 1e-13
Identities = 30/74 (40%), Positives = 50/74 (67%)
Frame = +2
Query: 620 KVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGS 799
+ G+ +F++ L + +L + K G++ PTPIQ+ IP+++ GRD++G A+TGS
Sbjct: 58 RTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGS 117
Query: 800 GKTAAFLVPIINML 841
GKTAAF++P+I L
Sbjct: 118 GKTAAFVIPMIEHL 131
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 898 IXSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAV 1005
I SP REL LQ + FS G+ L+ GG ++
Sbjct: 144 ILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSL 179
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 68.1 bits (159), Expect = 2e-12
Identities = 28/50 (56%), Positives = 40/50 (80%)
Frame = +2
Query: 704 KAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDP 853
K G++ PTPIQ+ AIP++++ RD++G AQTGSGKTAAF +P+I L +P
Sbjct: 63 KLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP 112
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 64.5 bits (150), Expect = 3e-11
Identities = 26/56 (46%), Positives = 43/56 (76%)
Frame = +2
Query: 659 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVP 826
FE L++ +L + +AG+ +P+PIQ+ +IPI +SGRD++ A+ G+GKTAAF++P
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIP 101
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 64.5 bits (150), Expect = 3e-11
Identities = 36/74 (48%), Positives = 44/74 (59%)
Frame = +2
Query: 620 KVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGS 799
KV+G NP PIE F L +N+ K + T IQ+ AIP I S RDL+ CA TGS
Sbjct: 39 KVTGNNPVDPIEEFPEGIL----CENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGS 94
Query: 800 GKTAAFLVPIINML 841
GKT A+L PI+ L
Sbjct: 95 GKTIAYLFPILQKL 108
Score = 31.9 bits (69), Expect = 0.19
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 898 IXSPTRELTLQIFNEXRKFSYGSXLKV 978
I +PTREL QI+ + K S+G+ LK+
Sbjct: 120 IVAPTRELCEQIYRQAEKLSFGTSLKI 146
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 64.1 bits (149), Expect = 4e-11
Identities = 29/64 (45%), Positives = 42/64 (65%)
Frame = +2
Query: 650 IESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPI 829
IE F L + + + + G+ T IQK +IP +++GRD++G A+TGSGKT AFL+P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 830 INML 841
I ML
Sbjct: 148 IEML 151
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 61.7 bits (143), Expect = 2e-10
Identities = 27/65 (41%), Positives = 43/65 (66%)
Frame = +2
Query: 653 ESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPII 832
++F NL + + K + KPT +Q IP+ + G+DL+ A+TGSGKTAA+L+PI+
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 833 NMLLQ 847
+LL+
Sbjct: 74 ELLLK 78
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 60.9 bits (141), Expect = 4e-10
Identities = 27/68 (39%), Positives = 45/68 (66%)
Frame = +2
Query: 656 SFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIIN 835
SF++ N+ K++ + V G++K TP+Q NAIP+ + +DL+ A TGSGKT A+L+P +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 836 MLLQDPKD 859
+ + D
Sbjct: 62 KVTRRDTD 69
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 60.9 bits (141), Expect = 4e-10
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Frame = +2
Query: 509 KKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESFETANLRKYV 688
K+ T+V T D++E FS + + ++ +I N P +F L +
Sbjct: 90 KRDNTFVTSLFTGDDSEHFSQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQL 149
Query: 689 LDNVL-KAGYRKPTPIQKNAIPIIMS--GRDLMGCAQTGSGKTAAFLVPIINMLLQDPKD 859
D++ K PT IQ +P +++ +D AQTGSGKT A+L+PI+ L++ PK+
Sbjct: 150 ADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKN 209
Query: 860 L 862
L
Sbjct: 210 L 210
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 58.0 bits (134), Expect = 3e-09
Identities = 34/104 (32%), Positives = 56/104 (53%)
Frame = +2
Query: 539 PTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYR 718
PT + T + S S N+++F + + + + ++ +L +L ++ KAG+
Sbjct: 86 PTIEMTSLGSKVTSK--NYNEFSTLEEEDEHNSHGVDVSAWAHFSLSPEMLGSLSKAGFS 143
Query: 719 KPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQD 850
KP PIQ IP G D++G A TGSGKT AF +PI+ L++
Sbjct: 144 KPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRN 187
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 57.6 bits (133), Expect = 3e-09
Identities = 27/72 (37%), Positives = 43/72 (59%)
Frame = +2
Query: 653 ESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPII 832
+SF + +++D + +PT IQ+ I I+ GR+ +G A+TGSGKTAAF +PII
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 833 NMLLQDPKDLIS 868
+DP + +
Sbjct: 67 EKWSKDPSGIFA 78
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +1
Query: 865 LXKWLRPXTGY---IXSPTRELTLQIFNEXRKFSYGSXLKVAXAYGG 996
+ KW + +G I +PTREL +QI + LK A GG
Sbjct: 66 IEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGG 112
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 55.2 bits (127), Expect = 2e-08
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Frame = +2
Query: 617 VKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTG 796
V+++ + SFE NL++ +L + GY P+ +Q AI I GRD++ AQ+G
Sbjct: 9 VELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSG 68
Query: 797 SGKTAAFLVPI---INMLLQDPKDLI 865
+GKTA F + I I++ ++D + LI
Sbjct: 69 TGKTATFSIGILQSIDLSVRDTQALI 94
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 54.4 bits (125), Expect = 3e-08
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Frame = +2
Query: 713 YRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINML--LQDPKDL 862
Y++PTPIQ P +++GRD++G A+TGSGKT AF +P + L L D K +
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSV 236
Score = 32.3 bits (70), Expect = 0.14
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 898 IXSPTRELTLQIFNEXRKFSYGSXLKVAXAYGG 996
+ SPTREL +Q + G+ LK YGG
Sbjct: 241 VVSPTRELAIQTYENLNSLIQGTNLKAVVVYGG 273
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 53.2 bits (122), Expect = 7e-08
Identities = 25/79 (31%), Positives = 45/79 (56%)
Frame = +2
Query: 605 DHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGC 784
D + V N I++F+ NL+ +L + G+ +P+ IQ+ AI I+ RD++
Sbjct: 3 DQLEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQ 62
Query: 785 AQTGSGKTAAFLVPIINML 841
AQ+G+GKTA F + ++ +
Sbjct: 63 AQSGTGKTATFSISVLQKI 81
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 53.2 bits (122), Expect = 7e-08
Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Frame = +2
Query: 488 IGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESFET 667
+ E K + + ++E S + N + ++ +P ++SFE
Sbjct: 59 VDAKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEE 118
Query: 668 ANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSG--RDLMGCAQTGSGKTAAFLVPIIN 835
L+ +L + ++KP+ IQ+ A+P+++S R+++G +Q+G+GKTAAF + +++
Sbjct: 119 LELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLS 176
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 53.2 bits (122), Expect = 7e-08
Identities = 30/78 (38%), Positives = 43/78 (55%)
Frame = +2
Query: 725 TPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKDLISXNGCAXPQVIXY 904
T IQK IP + GRD++G A+TGSGKT AF+VP+I L + K S +G +
Sbjct: 63 TEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYR--KKWTSLDGLGALVISPT 120
Query: 905 LQREN*LFKYLMXLGNSH 958
+ F+ L+ +G H
Sbjct: 121 RELAIQTFETLVKIGRLH 138
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 46.0 bits (104), Expect = 1e-05
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +1
Query: 898 IXSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTA 1002
I SPTREL LQIF E RK +YG+ ++V+ A GG +
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNS 151
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 662 ETANLRKYVLDNVLKAGYRKPTPIQKNAI-PIIMSGRDLMGCAQTGSGKTAAFLV 823
E A+L +++ +AG+ K TP+Q+ + + + + + A+TG+GKT AFL+
Sbjct: 41 EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLL 95
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Frame = +2
Query: 641 PRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMS----------GRDLMGCAQ 790
P F + N+ +++ + K + +Q +P+++ G D+ A
Sbjct: 122 PNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAA 181
Query: 791 TGSGKTAAFLVPIINML 841
TGSGKT ++++PI+ L
Sbjct: 182 TGSGKTLSYVIPIVQCL 198
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.9 bits (64), Expect = 0.77
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 731 IQKNAIPIIM-SGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKDLISXN 874
IQ + PI + +++ CA TG+GKT ++ I+N L + ++ +S N
Sbjct: 523 IQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFN 571
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 734 QKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQD 850
Q +AI + +G ++ T SGK+ + +PI+ LL+D
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLED 354
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 910 TRELTLQIFNEXRKFS-YGSXLKVAXAYGG 996
TREL QI NE +FS Y ++ A YGG
Sbjct: 128 TRELAFQIKNEYARFSKYLPDVRTAVFYGG 157
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 584 GINFDKFDHIAVKVSGE--NPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAI 748
G+ F ++ +V G+ +P +P+ R Y V KA TPI NAI
Sbjct: 253 GVFLIDFSYLLTQVEGKLGSPEKPLSDLGLVTYRSYWKMRVAKALLEITTPISINAI 309
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 563 RFPSHHLLVLEAHRLPASSFPRFP 492
R PS LE H LP SS P FP
Sbjct: 146 RTPSRSSNTLELHSLPISSSPSFP 169
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 587 INFDKFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTP 730
+NF+ VK+SG N E+ + + +L N YR+PTP
Sbjct: 824 VNFNNGSMEGVKLSGGNDGGGTENHRDSTVGGGILKNPKAYPYREPTP 871
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 599 KFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDL 775
+F +++ + EN P+ + SF +L+ D + Y +P IP I SG L
Sbjct: 516 EFPKHSLRDNSENAPQILSSFHDLSLQNESFDEMFNGRYENGSP-----IPFISSGSGL 569
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +1
Query: 847 RSKGSDLXKWLRPXTGYIXSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGT 999
++ G+ + + + Y EL LQ +N+ R+F S A+G T
Sbjct: 192 QTNGTSVFQSITCMPAYRSYSFEELRLQDYNQGRRFGNASSTNTTSAFGST 242
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 467 NDYEDNEIGENGETKKPVTYVPPEPTNDETEI---FSSTISSGINFDKFDHIAVKVSGE 634
N ++ EI ++ E+ T V EPT +ETE +++ G DK A SG+
Sbjct: 140 NTVKEEEIEKDDESATTETPVKEEPTGEETEADHEEKASVDHGNFSDKTTSEASSASGD 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,608
Number of Sequences: 5004
Number of extensions: 59501
Number of successful extensions: 218
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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