Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J02
         (1244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      175   7e-46
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   9.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  175 bits (426), Expect = 7e-46
 Identities = 83/141 (58%), Positives = 105/141 (74%)
 Frame = +2

Query: 476 EDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIE 655
           EDN+  E  + K+   Y+PPE  NDE  +F + +  GINFDK+D+I V VSG+N P+PIE
Sbjct: 139 EDNDEEEAQKPKEQ--YIPPELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIE 196

Query: 656 SFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIIN 835
           SFE A LR  VLDN+ K+GY+KPTP+QK+A+PIIM+GRDLM CAQTGSGKTAAF VPIIN
Sbjct: 197 SFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIIN 256

Query: 836 MLLQDPKDLISXNGCAXPQVI 898
            LL+   DL+  +    PQV+
Sbjct: 257 TLLERSVDLVVTSTYCEPQVV 277



 Score = 46.8 bits (106), Expect = 4e-07
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +1

Query: 898  IXSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAV 1005
            I SPTRELT+QI+ +  KFS  S LK   AYGGT+V
Sbjct: 278  IVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSV 313


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 158  PPPPLQNHD 184
            PPPP +NHD
Sbjct: 1860 PPPPPRNHD 1868


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 488 IGENGETKKPVTYVPPEP 541
           +G+N E K  VT  PP P
Sbjct: 324 VGDNVEIKCDVTGTPPPP 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,257
Number of Sequences: 438
Number of extensions: 4208
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42502302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)