Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J01
         (1263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...   146   6e-36
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    29   1.0  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   1.4  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    28   2.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   5.5  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    26   9.6  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   9.6  

>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score =  146 bits (354), Expect = 6e-36
 Identities = 87/251 (34%), Positives = 130/251 (51%), Gaps = 8/251 (3%)
 Frame = +2

Query: 212 LPTVARLCLISTFLEDGLRMWFQWSEQ----RDYMDMSWGCGKFLATMFVIVNLFGQLGG 379
           +P + R  +++T+ ED +R+  QW EQ    RDY    +G    L  +FV V L   L G
Sbjct: 54  MPLLGRFLIVATYFEDAIRIVTQWPEQVSYMRDYRRFRFGTAPLL--LFVCVVLM--LVG 109

Query: 380 CVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQ-FXXXXXXXXXXXXXXXXXXXXXXX 556
             +V+ + +   A G L F+ +LQ FAY ++   + F                       
Sbjct: 110 STLVVFKKRQAYAIGSLLFVTLLQAFAYGLITSGEMFFRNMSVIGGLCLVASDTFIHRRI 169

Query: 557 SLFAGVPSLGENKPKTYLQLAGRILLAFMFITLLRFE---ISFLQIIQDLLGSILMILVT 727
           + FAG+P++ E+  +TY QLAGR+LL FMF+ LL  E   IS+ +I+  +L      +V 
Sbjct: 170 NRFAGLPAVSEHNKRTYFQLAGRVLLIFMFLGLLAKEGSGISWTRILVHILSVTACAMVV 229

Query: 728 VGYRTKXXXXXXXXXXXXXXXYHNAWWAVPSYKPLRDFLKYDFFQTLSVIGGLLMIVYLG 907
           +G++ K                 N++W+VP   P RDF +YDFFQTLS++GGLL +V  G
Sbjct: 230 IGFKAKFFAAVLVLILSVANFIINSFWSVPRESPYRDFYRYDFFQTLSIVGGLLYLVNTG 289

Query: 908 PGGVSMDEHXK 940
           PG  S+DE  K
Sbjct: 290 PGKFSVDEKKK 300


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 140 QIPNEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQ 280
           QIP    STA+  A+ + ++ +  LP V   C   TF  D L  +FQ
Sbjct: 41  QIPQIEGSTAKRDAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQ 87


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -2

Query: 350 SQTLWRGICRSPRTCPCSLS 291
           ++TLW  ICR  RTCP SLS
Sbjct: 352 ARTLW-AICRHLRTCPLSLS 370


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = -3

Query: 781 NCQYEDK---HQSRQLRPVAHRHQYHQDAPEKI--LYDLQE*DFKS*ERDEHEGQQDATG 617
           N   +DK   H+S   R ++   +YHQD P+K    Y L+E D    +R E E +Q    
Sbjct: 256 NSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDK---QRKEFENRQRLQK 312

Query: 616 ELQVRLRFVLSERRHAREQT 557
           E + +     + + HA   T
Sbjct: 313 EKEFQKSREAALKIHASRNT 332


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 245 TFLEDGLRMWFQWSEQRDYMDM 310
           T  +DGLR+W  W   +D  D+
Sbjct: 181 TIRKDGLRLWGSWKRGKDESDL 202


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 806 WAVPSYKPLRDFLKYDFFQTLSVIGGLLMIVYLGPGGVSMDE 931
           W    Y  +  FL     + +SVIG +++ + +  GGV  D+
Sbjct: 192 WGTEGYGEVEFFLS--IMKVISVIGFVILSIIIAAGGVPTDD 231


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 471 SILYANVCNTTMKNSTPQAISTLSLPSTITH 379
           +I  +N  NTT   ST Q  S+  +PS + H
Sbjct: 48  AIPQSNALNTTPNESTSQIDSSPKIPSAVPH 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,377,132
Number of Sequences: 5004
Number of extensions: 87585
Number of successful extensions: 241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 685576410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)