Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_J01
(1263 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58728-5|AAB00591.1| 277|Caenorhabditis elegans Surfeit homolog... 289 2e-78
Y14949-1|CAA75173.1| 277|Caenorhabditis elegans SURF-4 protein ... 287 9e-78
Z81581-7|CAB04659.1| 269|Caenorhabditis elegans Hypothetical pr... 122 5e-28
AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical ... 31 2.3
U21324-9|AAA62560.2| 755|Caenorhabditis elegans Coenzyme q (ubi... 29 7.0
>U58728-5|AAB00591.1| 277|Caenorhabditis elegans Surfeit homolog
protein 4 protein.
Length = 277
Score = 289 bits (710), Expect = 2e-78
Identities = 131/267 (49%), Positives = 184/267 (68%), Gaps = 1/267 (0%)
Frame = +2
Query: 149 NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSWGCGK 328
NE ++ AED A+ RK + LP +ARLCL+STFLEDG+RM+FQW +Q+ +M SW CG
Sbjct: 11 NEMLAKAEDAAEDFFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFMQESWSCGW 70
Query: 329 FLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQFXXXXXXX 508
F+AT+FVI N FGQ +M++ R KV +ACG+L IV+LQT AY ILWD++F
Sbjct: 71 FIATLFVIYNFFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFLARNIAV 130
Query: 509 XXXXXXXXXXXXXXXXSLFAGVPSLGE-NKPKTYLQLAGRILLAFMFITLLRFEISFLQI 685
SLFAGVP++G+ NKPK+Y+ LAGR+LL FMF++L+ FE+SF+Q+
Sbjct: 131 GGGLLLLLAETQEEKASLFAGVPTMGDSNKPKSYMLLAGRVLLIFMFMSLMHFEMSFMQV 190
Query: 686 IQDLLGSILMILVTVGYRTKXXXXXXXXXXXXXXXYHNAWWAVPSYKPLRDFLKYDFFQT 865
++ ++G L+ LV++GY+TK + NAWW +PS + RDF+KYDFFQT
Sbjct: 191 LEIVVGFALITLVSIGYKTKLSAIVLVIWLFGLNLWLNAWWTIPSDRFYRDFMKYDFFQT 250
Query: 866 LSVIGGLLMIVYLGPGGVSMDEHXKKW 946
+SVIGGLL+++ GPGGVS+D++ K+W
Sbjct: 251 MSVIGGLLLVIAYGPGGVSVDDYKKRW 277
>Y14949-1|CAA75173.1| 277|Caenorhabditis elegans SURF-4 protein
protein.
Length = 277
Score = 287 bits (705), Expect = 9e-78
Identities = 130/267 (48%), Positives = 183/267 (68%), Gaps = 1/267 (0%)
Frame = +2
Query: 149 NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSWGCGK 328
NE ++ ED A+ RK + LP +ARLCL+STFLEDG+RM+FQW +Q+ +M SW CG
Sbjct: 11 NEMLAKREDAAEDFFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFMQESWSCGW 70
Query: 329 FLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQFXXXXXXX 508
F+AT+FVI N FGQ +M++ R KV +ACG+L IV+LQT AY ILWD++F
Sbjct: 71 FIATLFVIYNFFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFLARNIAV 130
Query: 509 XXXXXXXXXXXXXXXXSLFAGVPSLGE-NKPKTYLQLAGRILLAFMFITLLRFEISFLQI 685
SLFAGVP++G+ NKPK+Y+ LAGR+LL FMF++L+ FE+SF+Q+
Sbjct: 131 GGGLLLLLAETQEEKASLFAGVPTMGDSNKPKSYMLLAGRVLLIFMFMSLMHFEMSFMQV 190
Query: 686 IQDLLGSILMILVTVGYRTKXXXXXXXXXXXXXXXYHNAWWAVPSYKPLRDFLKYDFFQT 865
++ ++G L+ LV++GY+TK + NAWW +PS + RDF+KYDFFQT
Sbjct: 191 LEIVVGFALITLVSIGYKTKLSAIVLVIWLFGLNLWLNAWWTIPSDRFYRDFMKYDFFQT 250
Query: 866 LSVIGGLLMIVYLGPGGVSMDEHXKKW 946
+SVIGGLL+++ GPGGVS+D++ K+W
Sbjct: 251 MSVIGGLLLVIAYGPGGVSVDDYKKRW 277
>Z81581-7|CAB04659.1| 269|Caenorhabditis elegans Hypothetical
protein T02E1.7 protein.
Length = 269
Score = 122 bits (294), Expect = 5e-28
Identities = 76/269 (28%), Positives = 126/269 (46%), Gaps = 3/269 (1%)
Frame = +2
Query: 149 NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSWGCGK 328
N ++ ED + + R + VLPT+ RL LISTF+EDGLR+ F + ++ +WG
Sbjct: 4 NVVITRCEDYTETLARNTRKVLPTIGRLLLISTFVEDGLRLLFNTHDHVNHFSYNWGLNY 63
Query: 329 FLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSIL--WDVQFXXXXX 502
+ IV + L G + V+ R KV + VL F + Q Y + + +
Sbjct: 64 HFSLFLTIVMIINLLFGSLFVMMRYKVTESSAVLGFTIFAQVILYQLYTTYHLLTRNISI 123
Query: 503 XXXXXXXXXXXXXXXXXXSLFAGVPSLGENKPKTYLQLAG-RILLAFMFITLLRFEISFL 679
+ + +P T + LA R+ L M I+++ F++S+
Sbjct: 124 VAAIMLLVAENMLRKPKPANYTQLPRDEHEIEVTSVLLAACRVCLNLMLISMVHFDMSYT 183
Query: 680 QIIQDLLGSILMILVTVGYRTKXXXXXXXXXXXXXXXYHNAWWAVPSYKPLRDFLKYDFF 859
+I+ ++ +MI V +G++T+ N +W + + ++YDFF
Sbjct: 184 RILLCIISYGMMIFVWLGFKTRMMSFMLATWLFAYNIVLNDFWNKDAELHI---IRYDFF 240
Query: 860 QTLSVIGGLLMIVYLGPGGVSMDEHXKKW 946
QTLS IGGLL++++ GPG S DE KKW
Sbjct: 241 QTLSAIGGLLLLIHTGPGEFSFDELKKKW 269
>AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical
protein W10G11.5 protein.
Length = 345
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = -1
Query: 471 SILYANVCNTTMKNSTPQAISTLSLPSTITHPP--N*PNKFTITNIVARNLPQPQDMSM* 298
++ ++ T S P + + LP+T+T P + T T + P+P
Sbjct: 112 TVTSTHIPTTVTTTSIPTTVPSTQLPTTVTTTPIPTTTTRKTTTTTLRPTKPRPMTKPRV 171
Query: 297 SLCSDHWNHMRRPSSR 250
+C W RPS +
Sbjct: 172 KVCPYGWATFNRPSGK 187
>U21324-9|AAA62560.2| 755|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 8 protein.
Length = 755
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 350 IVNLFGQLGGCVMVLGRLKVDIACGVLF 433
I +L +L GC ++ +LK ++CG LF
Sbjct: 709 IYSLHRKLSGCYLLAAKLKATVSCGGLF 736
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,982,966
Number of Sequences: 27780
Number of extensions: 527239
Number of successful extensions: 1581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3516412346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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