Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_J01
         (1263 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   2.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   5.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   5.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   7.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   9.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 380 ILLIDQINLLSQTLWRGICRSPRTCPCSLSALTTGTTCGDRPP 252
           ++ +D+   +++ L  G+ R+PR     +S +  G  C   PP
Sbjct: 134 MISVDRFCAITKPLKYGVKRTPRRMIVYVSLVWLGAACISLPP 176


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 859 EEVIFEEVSERFVGWHRPP 803
           EE     + E+F+GW+ PP
Sbjct: 18  EEGYVPSMREKFLGWNVPP 36


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 859 EEVIFEEVSERFVGWHRPP 803
           EE     + E+F+GW+ PP
Sbjct: 18  EEGYVPSMREKFLGWNVPP 36


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 469 TMGRTVPSPQFGIDRSATAGVGGGPS*RAQSVRGRAVARREQTEDVLATRRSHPAG 636
           T     P+P      SA AG  GG      +  G+  AR   ++D LA   S P G
Sbjct: 46  TTAAATPTPPSVPVGSAVAGTAGGALFPGMAAAGKGAAR---SDDWLANANS-PVG 97


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 418 SDIHFEPS*HHNTSS*LTK*IYYHKHCGEEFAAAPGHVHVVSL 290
           ++++  P  HH+T       I+   H     AA P H H   L
Sbjct: 406 NNVYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPL 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,828
Number of Sequences: 438
Number of extensions: 6593
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43222680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)