Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_I24
(1220 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c... 134 3e-32
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 28 3.0
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 27 4.0
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 27 4.0
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 7.0
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 27 7.0
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 26 9.2
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 26 9.2
>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 204
Score = 134 bits (323), Expect = 3e-32
Identities = 71/187 (37%), Positives = 108/187 (57%), Gaps = 4/187 (2%)
Frame = +2
Query: 221 DMCYFCFDVLYCQLH--SMEPPQTPKFTNEAYPLFVTWKIGKEH--RLRGCIGTFNAMHL 388
+ CY+CF+V+ L + K + PLFV + GK H +LRGCIGTF A L
Sbjct: 16 EYCYYCFEVVAATLEHRKVRDKWNAKSWTRSIPLFVKFASGKGHDKQLRGCIGTFRARPL 75
Query: 389 HSGLREYAITSALRDSRFSPITREEVPRLSVSVSILQHFEEAEHYLDWKLGKHGIRIEFV 568
+ L ++ +A D RF PI+ E+ L + +L FE + LDW++G HG+ I+F
Sbjct: 76 VTNLTYFSKQAAFCDERFRPISLGELALLECQIDLLVDFEPIDDPLDWEVGIHGVSIKFT 135
Query: 569 SERGSKRTATYLPQVATEQGWDQIQTIDSLLRKGGYKAAITADLRRSIKLTRYQSEEVSA 748
+ G + ++TYLP VA EQ WDQ +T++SL+ K GY +I + I TRY+S E+
Sbjct: 136 A-NGIRYSSTYLPSVAAEQRWDQEETLESLIHKAGYYGSIRS---LQITATRYKSLEIGC 191
Query: 749 SYTDYVN 769
+Y +Y++
Sbjct: 192 TYEEYLH 198
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 27.9 bits (59), Expect = 3.0
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +2
Query: 446 PITREEVPRLSVSVSILQHFEEAEHYLDWKLGKHGIRIEFVSERGSKRTATYLPQVATEQ 625
P E++ RL+VS +L FE + HG +EF++E G ++ + +
Sbjct: 62 PSALEKLSRLNVSYPMLFDFENEAA----EKKTHGGVLEFIAEEGRVYLPYWMMTTLSLE 117
Query: 626 GWDQIQTIDSLLRKGGY 676
D ++ I++ + +G Y
Sbjct: 118 PGDLVRVINTDIAQGSY 134
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 250 ILPVTQYGTTADAQIHKRGLSFICDLEDRERAPSKGMHWDLQRYAL 387
++ V Q G QI+K G FI D + AP+ WD ++Y L
Sbjct: 46 VIRVDQAGELGANQIYK-GQHFILQFTDPKVAPTIQHMWDQEKYHL 90
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 27.5 bits (58), Expect = 4.0
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Frame = +2
Query: 278 PQTPKFTNEAYPLFVTWKIGKEHRLRGCI--GTFNAM---HLHSGLREYAITSALRDSRF 442
P +P T Y +TW + HR+ GC+ GT A +L + L Y++ +A
Sbjct: 59 PNSPHLT--IYEPQLTWYLSSLHRITGCVVAGTLYAFAMGYLVAPLAGYSLDTATISGLI 116
Query: 443 SPI-TREEVP-RLSVSVSILQHFEEAEHYLDWKLGK 544
+ T +VP + +S + H +L W K
Sbjct: 117 QQVPTWIKVPAKFVISYPLTFHIFNGIRHLIWDTTK 152
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 344 ALSRSSKS-QIKDRPRL*IWASAVVPYCVTGSIKHQNKNNTY 222
+L+R++ S Q D PR+ + A+ +P+C+ + + + TY
Sbjct: 590 SLARAAASRQTADHPRVLVLAATNLPWCIDDAARRRFVRRTY 631
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 272 PYCVTGSIKHQNKNNTYRVSLQNRGNHSKVDQH 174
PY V +IK + +N +VSL + H +QH
Sbjct: 122 PYNVLSTIKPKTVDNQMKVSLTGQQIHDMFEQH 154
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +2
Query: 197 YHDSVAILDMCYFCFDVLYCQLHSMEPPQT--PKFTNEAYPLFVTWKIGKEHRLRGCIGT 370
YH +A + C C+ LY Q + Q+ F + +YP F+ L+ IG
Sbjct: 456 YHSEIAQMLCCSLCYLCLYAQNLNSHSSQSLFELFQSASYPGFLISNDVNHKILKYVIGA 515
Query: 371 FN 376
N
Sbjct: 516 IN 517
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 486 TETESRGTSSLVIGENRESLRALVIAYSRRPECKCIALKVPMHPLRRCSFP-IFQVTNKG 310
T SR + +I +SLR L I+ + + L V +H R+C + ++TN G
Sbjct: 396 TRFYSRASRETIIDHLYDSLRLLAISVTMKYVRNQTILYVNLHDKRKCLLQGVIELTNLG 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,767
Number of Sequences: 5004
Number of extensions: 62927
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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