Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I24
         (1220 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50795-3|CAA90664.1|  200|Caenorhabditis elegans Hypothetical pr...   195   5e-50
U88176-1|AAO91741.1|  459|Caenorhabditis elegans Hypothetical pr...    30   3.8  
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    29   8.8  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    29   8.8  

>Z50795-3|CAA90664.1|  200|Caenorhabditis elegans Hypothetical
           protein R166.3 protein.
          Length = 200

 Score =  195 bits (476), Expect = 5e-50
 Identities = 91/187 (48%), Positives = 123/187 (65%), Gaps = 1/187 (0%)
 Frame = +2

Query: 212 AILDMCYFCFDVLYCQLHSMEPPQTPK-FTNEAYPLFVTWKIGKEHRLRGCIGTFNAMHL 388
           A + M  +CFDV+  QL+  + P  PK   N   PLFVTWK G +H LRGCIGTF+ + L
Sbjct: 4   ANIQMAVYCFDVINAQLNREKEPPVPKEIPNVKLPLFVTWKKGHQHDLRGCIGTFSDLRL 63

Query: 389 HSGLREYAITSALRDSRFSPITREEVPRLSVSVSILQHFEEAEHYLDWKLGKHGIRIEFV 568
             GL EYA TSA  DSRF PI+REEVP L   VS+L +FE   ++ DW +G+HG+R+ F 
Sbjct: 64  GEGLNEYAKTSAFHDSRFKPISREEVPSLQCGVSLLINFEPIHNFRDWTIGRHGVRMNF- 122

Query: 569 SERGSKRTATYLPQVATEQGWDQIQTIDSLLRKGGYKAAITADLRRSIKLTRYQSEEVSA 748
            +    R+A +LP+VA EQGW+ ++TID L+RK GY   I   LR ++++ R+QS ++  
Sbjct: 123 DDGHRNRSAVFLPEVAQEQGWNHVETIDHLIRKSGYGGHINDALRSALRIVRFQSSKLVL 182

Query: 749 SYTDYVN 769
            Y DYVN
Sbjct: 183 DYKDYVN 189


>U88176-1|AAO91741.1|  459|Caenorhabditis elegans Hypothetical
           protein F18F11.5 protein.
          Length = 459

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 271 GTTADAQIHK--RGLSFICDLEDRERAPSKGMHWDLQRYALTFR 396
           G T D +I K  R +  +C L  +  AP  G HW L+   + FR
Sbjct: 14  GNTPD-EIEKISRTIEDLCQLRHKRLAPMYGYHWRLETELMVFR 56


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 334 RERAPSKGMHWDLQRYALTFRPA*ICYYKC--SERLSIFSYNKRGSSA 471
           R++   KG+ WD  +  + F P    +Y    S+ L IFSY  R  ++
Sbjct: 91  RKKQKEKGLSWDESKLLVMFHPIYRIFYVSHDSQDLQIFSYIARDGAS 138


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 334 RERAPSKGMHWDLQRYALTFRPA*ICYYKC--SERLSIFSYNKRGSSA 471
           R++   KG+ WD  +  + F P    +Y    S+ L IFSY  R  ++
Sbjct: 91  RKKQKEKGLSWDESKLLVMFHPIYRIFYVSHDSQDLQIFSYIARDGAS 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,213,765
Number of Sequences: 27780
Number of extensions: 350002
Number of successful extensions: 922
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)