Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I23
         (1218 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    42   0.024
UniRef50_O25547 Cluster: Putative uncharacterized protein; n=1; ...    34   8.6  
UniRef50_A5I0E6 Cluster: Propanediol utilization protein; n=4; C...    34   8.6  

>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.3 bits (95), Expect = 0.024
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +2

Query: 506 DPDMIRYIDEXGQTTTRMQ 562
           DPDMIRYIDE GQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_O25547 Cluster: Putative uncharacterized protein; n=1;
           Helicobacter pylori|Rep: Putative uncharacterized
           protein - Helicobacter pylori (Campylobacter pylori)
          Length = 140

 Score = 33.9 bits (74), Expect = 8.6
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 137 HAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 316
           H +  +D  K    L  L E   +  EEL    ES    +   + +   + +F ++YK++
Sbjct: 69  HTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDI 128

Query: 317 K 319
           K
Sbjct: 129 K 129


>UniRef50_A5I0E6 Cluster: Propanediol utilization protein; n=4;
           Clostridium botulinum|Rep: Propanediol utilization
           protein - Clostridium botulinum A str. ATCC 3502
          Length = 279

 Score = 33.9 bits (74), Expect = 8.6
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +2

Query: 164 KEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMV-DSFN--EFYKN 313
           KE NS+  L    K++IE+   K  S ++ E++K+NF  +  D FN  E YKN
Sbjct: 174 KEMNSIEDLIPDLKESIEKRNIKNISRISEESIKRNFHRLTYDYFNTVEKYKN 226


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,234,064
Number of Sequences: 1657284
Number of extensions: 9815313
Number of successful extensions: 25387
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25380
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 123197995029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)