Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I19
         (1321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    31   0.36 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   1.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   4.4  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 877  SIAVTEEQEAKLNKLLRLWESKSNYFEXAVLKNEESTSSYQXFKRXISQHAN 1032
            SI   EE+     +L  LWESKS+  +  V   +E  +S Q     +++  N
Sbjct: 273  SIKELEEEVETQKRLTALWESKSSELQSEVAALQEKLTSQQSLYNNVTEELN 324


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 23/94 (24%), Positives = 44/94 (46%)
 Frame = +3

Query: 366 LAVNSAPPPLPQHPQEIDSITTQINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKA 545
           L +  +   L +  +++DS+   I  LKE + +SE  L          ++V I+ L  K 
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREV-IDNL--KG 724

Query: 546 QMESLQIMADENNINLSELDNILQPIIDSCTKDS 647
           + E+L+   ++ + +LS+  N    +    TK S
Sbjct: 725 KHETLEAQRNDLHSSLSDAKNTNAILSSELTKSS 758


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 821 QKISRKIWKMWWF 859
           +K ++ IWK+WWF
Sbjct: 348 KKFAKAIWKLWWF 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,744,471
Number of Sequences: 5004
Number of extensions: 72219
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)