Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_I18
(1259 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 204 2e-53
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 31 0.44
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.44
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 29 1.4
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 27 4.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 5.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 5.5
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 7.2
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 27 7.2
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 26 9.5
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 204 bits (498), Expect = 2e-53
Identities = 108/251 (43%), Positives = 154/251 (61%), Gaps = 2/251 (0%)
Frame = +2
Query: 137 RVLVGVKRVIDYAVKIRVKPDKSGVVTDGVKHSMNPFDEIAVEEAVRMKE--KKLASEVI 310
R+LVGVKR +DY +K R+ K+ V G K S+NPF +IAVEEA+RMKE K + +
Sbjct: 5 RILVGVKRTLDYMLKPRINATKTAVDLSGQKMSINPFCDIAVEEAIRMKETLKNRIEDTL 64
Query: 311 AVSCGPSQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIV 490
V+ G + ++ LR LA G RA + V E L+P+ VAK+L + EK++LV++
Sbjct: 65 VVTAGQTSSEPILRQCLAKGIGRAALINVGEKE---LEPLSVAKLLKATVEKEKSNLVLL 121
Query: 491 GKQAIDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLS 670
GKQAIDDD++QT M AA+L WPQ T ASK+ + +TREIDGG E + + +PA+++
Sbjct: 122 GKQAIDDDAHQTGGMLAAMLGWPQFTSASKVRIEGDKVIVTREIDGGEETLSSTLPAIIT 181
Query: 671 ADLRLNEPRYATLPNIMXXXXXXXXXXXXXDLGVDLAPRIKVVSVEDPPVRQAGSIIPDV 850
DLRLN PR+A L +M DLGV + R++ VSV +P ++ ++ V
Sbjct: 182 TDLRLNVPRFANLAKVMKARKAPLGKMSPEDLGVTIDQRLQTVSVSEPVQKRQNIMVKSV 241
Query: 851 DTLVAKLKEGG 883
D +V LKE G
Sbjct: 242 DEMVKTLKELG 252
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.7 bits (66), Expect = 0.44
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Frame = -3
Query: 690 SFSRKSALSTAGIFVL-ITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVICAVWLE 514
SF++ S+LS++ + TS S+S + A S S +P S+ ++
Sbjct: 504 SFTKFSSLSSSQLSTENFTSASSSLS--LTNAKSSLSTPSTTIPTSNSS-----VSLQTS 556
Query: 513 SSSMACLPTITKSAFSSCDSFANIFAT*MGCNVSYSAPATST*IARSAPIARAVLRVSCA 334
SS + P I+ S ++ S + + N SY TS+ I S+ + L C+
Sbjct: 557 SSLIISSPIISSSLTATSTSTPALTHSITPSNTSY----TSSLIPSSSTDYSSSLITVCS 612
Query: 333 CDGPQETAMTSLANFFSFIRTASSTAISSKGFIECFTPSVTTPDLSGFT 187
+ E + TSLA+ S + + ++ S F+ T TT GFT
Sbjct: 613 -NVTSEISSTSLASLISTLTSQQISSNKSSEFVGQTTTEYTTSGSVGFT 660
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.44
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Frame = -3
Query: 525 VWLESSSMACLPTITKSAFSSCDSFANIFAT*MGCNVSYS-APATST*IARSAPIARAVL 349
V + SSS++ +T S FSS S + + S + + A T + S + +V+
Sbjct: 157 VSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVV 216
Query: 348 RVSCACDGPQETAMTSLANFFSFIRTASSTAISSKGFIECFTPSVTTPDLSGFTRIFTA* 169
S + + +TS + S I + SS++ S+ + + S T S + I ++
Sbjct: 217 SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSS 276
Query: 168 SITLLTPTRT 139
S + +PT T
Sbjct: 277 SSSSSSPTST 286
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 593 QSFL-SLMQMCLVANLIKQQSSVLSGWSHHL 504
Q FL SL C++ IK S++ W+HHL
Sbjct: 73 QIFLFSLFGSCMLFRFIKYPSTIKDSWNHHL 103
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 912 IKSSIYDYTCPPSLSLATRVSTSGMMEPACLTGGSSTETTLIRGARSTP 766
+ S +Y YT + A+ +ST+G + A G + ETT A TP
Sbjct: 36 VTSKVYAYTTVTLEAAASAISTNGAAKEAATAAGDA-ETTSSVAASVTP 83
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -3
Query: 513 SSSMACLPTITKSAFSSCDSFANIFAT*MGCNVSYSAPATST*IARSAPIARAV 352
SSS + PTIT+S+ S+ S + N SYS+P +S + S I ++
Sbjct: 781 SSSSSATPTITQSSISTSVSSQS------SMNSSYSSPISSNSVTSSTSIISSI 828
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 5.5
Identities = 53/264 (20%), Positives = 112/264 (42%), Gaps = 3/264 (1%)
Frame = -3
Query: 912 IKSSIYDYTCPPSLSLATRVSTSGMMEPACLT---GGSSTETTLIRGARSTPRSLALTFL 742
I S I + P + S + + +S P+ + SST +T + S+P S++ +
Sbjct: 560 ISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSIS 619
Query: 741 RGFFFAFMMLGSVAYRGSFSRKSALSTAGIFVLITSKPPSISRVIVRAPSVFSIFDANVP 562
+ ++ S S+ +G +++S SIS + + S S + ++V
Sbjct: 620 SS---STILSSPTPSTSSLMISSSSIISGSSSILSS---SISTIPI--SSSLSTYSSSVI 671
Query: 561 CGQSNKAAVICAVWLESSSMACLPTITKSAFSSCDSFANIFAT*MGCNVSYSAPATST*I 382
S + ++ + SS +A + + S S S + ++ + N+++S+ + T +
Sbjct: 672 PSSSTLVSSSSSLIVSSSPVA---SSSSSPIPSSSSLVSTYSASLS-NITHSS-LSLTAM 726
Query: 381 ARSAPIARAVLRVSCACDGPQETAMTSLANFFSFIRTASSTAISSKGFIECFTPSVTTPD 202
+ S+ I +V + T ++S+ + + + SST +S+ I PS T
Sbjct: 727 SSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIV---SSTTVSN---ISSNLPSATASS 780
Query: 201 LSGFTRIFTA*SITLLTPTRTRDI 130
S T T + L+ + +R I
Sbjct: 781 QSQLTNSSTLATSLYLSSSSSRTI 804
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -3
Query: 627 PSISRVIVRAPSVFSIFDANVPCGQS 550
PS+S V RAP FS +ANVP G++
Sbjct: 285 PSMSYVY-RAPESFSSINANVPYGRN 309
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = -3
Query: 912 IKSSIYDYTCPPSLSLATRVSTSGMMEPACLTGGSSTETTLIRGARSTPRSLALTFLRGF 733
+ S++ D +CP + + G E LT + + I G S AL ++G+
Sbjct: 233 LNSTLQDISCPNITRIGQSLFFIGNQE---LTSLNFKQLESIGGTFMIANSAALAQIKGY 289
Query: 732 FFAFMMLGSVAYRGSFS 682
+ GS+ + G+FS
Sbjct: 290 DKLKTVAGSIDFTGNFS 306
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 808 FHRDHLDTRCQVHPKVFSTYFFERLL 731
FH DH+ R ++P V Y +LL
Sbjct: 312 FHSDHMRIRYALYPNVAMKYILRKLL 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,905,866
Number of Sequences: 5004
Number of extensions: 80686
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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