Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I18
         (1259 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0424 - 5601690-5601915,5602099-5602187,5603298-5603378,560...   276   2e-74
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451...    29   5.8  
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    29   7.7  

>04_01_0424 -
           5601690-5601915,5602099-5602187,5603298-5603378,
           5604875-5605240
          Length = 253

 Score =  276 bits (677), Expect = 2e-74
 Identities = 140/251 (55%), Positives = 175/251 (69%)
 Frame = +2

Query: 137 RVLVGVKRVIDYAVKIRVKPDKSGVVTDGVKHSMNPFDEIAVEEAVRMKEKKLASEVIAV 316
           ++LV VKRV+DYAVK+RV+PD++GV T  VK SMNPF EIAVEEA+R++E   A+EV+A 
Sbjct: 2   KILVAVKRVVDYAVKVRVRPDRTGVETASVKMSMNPFCEIAVEEALRLRESGAATEVVAA 61

Query: 317 SCGPSQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGK 496
           + GPSQ+ +TLRTALAMGADRA+HV         L P+ VAKIL  L+  E   LVI+GK
Sbjct: 62  TVGPSQSADTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGK 121

Query: 497 QAIDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLSAD 676
           QAIDDD NQT QM A LL+WPQGTFASK+       T+ RE+DGG+E I   +PAV++ D
Sbjct: 122 QAIDDDCNQTGQMLAGLLNWPQGTFASKVILNKEKATVEREVDGGIETISLDLPAVITTD 181

Query: 677 LRLNEPRYATLPNIMXXXXXXXXXXXXXDLGVDLAPRIKVVSVEDPPVRQAGSIIPDVDT 856
           LRLN+PRYATLPNIM             DL VD+   ++VV V +PP R+AG I+  VD 
Sbjct: 182 LRLNQPRYATLPNIMKAKSKVIKKVTPEDLDVDIRSDMEVVEVTEPPKRKAGVILSSVDE 241

Query: 857 LVAKLKEGGHV 889
           LV +LK    V
Sbjct: 242 LVDRLKNEARV 252


>02_03_0080 +
           14935664-14935796,14943858-14944175,14944352-14945199,
           14945249-14945521
          Length = 523

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 449 AKLSQDEKADLVIVGKQAIDDDSNQTAQMTAAL--LDWPQGTFASKIEKTDG 598
           A+L      + + +G    D+D +  A  T+ L  +DWP G   + IEK DG
Sbjct: 29  ARLRSGNGEEAMQLGGDRYDNDVDGVAAFTSKLRRVDWPAGFKPTGIEKYDG 80


>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
            3110157-3111444
          Length = 1821

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 509  DDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVL 667
            DD+N       ++LD  Q  F+ KI K+ G L   +E+  G   +  ++P+ L
Sbjct: 1373 DDANIIKLSKLSILDLEQNMFSGKIPKSIGQLKRLKELRLGENKLYGELPSTL 1425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,207,198
Number of Sequences: 37544
Number of extensions: 520784
Number of successful extensions: 1504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3899283420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)