Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I18
         (1259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   3.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   5.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   7.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +2

Query: 128 KMSRVLVGVKRVIDYAVKIRVKPDKS-GVVTDGV-KHSMNPFDEIAVEEAVRMKEKKLAS 301
           ++S    G+K   DYA+++R K  +  G  T  V K + +      V E   M+ + +A 
Sbjct: 477 ELSATFKGLKPSTDYAIQVRAKTTRGWGEYTPVVYKKTPHAMGLDYVGEDDNMQVRIIAG 536

Query: 302 EVIAV 316
            ++AV
Sbjct: 537 AIVAV 541


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = -3

Query: 558 GQSNKAAVICAVWLESSSMACLPTITKSAFSSCDSFANI 442
           G  +   ++C +W+    ++C  +I      S D F  I
Sbjct: 105 GNWSFGTIMCDLWVSFDVLSCTASILNLCMISVDRFCAI 143


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 892 LHMSAFLKLSYESVDIRYDG 833
           ++M  F+K  YE  +I Y+G
Sbjct: 279 VNMEPFMKSQYEENNIEYEG 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,690
Number of Sequences: 438
Number of extensions: 5647
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)