Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I17
         (1319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    29   1.1  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   5.8  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    27   5.8  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   5.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   7.6  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   7.6  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    27   7.6  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    27   7.6  

>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 524 PLSSAQYDIRWSGNWYIILFERGSCMATPSTDIVISTFLHFAPSFASDFF 375
           PL   ++DI+WS  WY +L      + + + +      L+FA  FA DFF
Sbjct: 142 PLHQPKFDIKWSKYWYQLLLGNKKQLDSINAEYGSQVALYFA--FA-DFF 188


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 727 MQKLSLQNKK-LELQMKAYRTRLQELSKVTYKDDLSAYLARNSLSDITEFKVPKE 888
           ++ + L+ KK +  +  A + RL +L+ +  + DLS YL++   S    F++ K+
Sbjct: 395 LETMVLEKKKAVATREAANKIRLVDLNDLELQKDLSTYLSKELASTEKAFRLVKQ 449


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/59 (22%), Positives = 33/59 (55%)
 Frame = +1

Query: 742 LQNKKLELQMKAYRTRLQELSKVTYKDDLSAYLARNSLSDITEFKVPKELEKQLASLTL 918
           + +++++L +  +  R++ L  +  + D + Y+    L    +FK+PKE +  + +LT+
Sbjct: 1   MSSQQMQLTISGFENRIKILEDLMNEFDSNLYIR---LKRECDFKLPKEYDVSIHALTI 56


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 231 QLDPRSGLARQGPRR-LSR*VPRLHPSRPAER 323
           QLDPR+ L  Q PRR LSR   RL    P  R
Sbjct: 205 QLDPRTMLQLQWPRRQLSRLCKRLSLKEPVYR 236


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +1

Query: 694  RFLND-NGKYIEMQKLSLQNKKLELQMKAYRTRLQEL-SKVTYKDDLSAYLARNSLSDIT 867
            RF N+ N   +E +K S  N+K+E + +    RLQ L + V   +  ++  ++N     T
Sbjct: 1240 RFFNNLNEIILEYKKASTVNQKMEKEEELAFLRLQALKASVKSNNAENSGSSKNEEVSAT 1299

Query: 868  EFKVPKELEKQLASLTLANGFSAMNGNK 951
               +  +L+K L   +L+N       +K
Sbjct: 1300 MENLISQLQKGLCDDSLSNKTDCTESSK 1327


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 640  LASEITLTIGQAFDL-AYRRFLNDNGKYIEMQKLSLQNKK 756
            L+ +I +++  A    + RR + DN   IE+Q+LS Q  K
Sbjct: 1584 LSQQIAISVSNALLFQSLRRTITDNVTLIELQRLSYQRYK 1623


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 858 GETVPGQVGGEIVFIRDLRQLLKSSPVGFHL*FKLFV 748
           GE  PG + G+++F+ D ++  +    G HL ++  V
Sbjct: 230 GEQAPGIIPGDVIFVIDQKEHPRFKRSGDHLFYEAHV 266


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 488 GNWYIILFERGSCMATPSTDIVISTFLHFAPSFASDFFSCCVNCSFLIASLTTS 327
           G    IL     C+  P+T  +I +F+H    F+S    C +  S  ++SL  S
Sbjct: 245 GPMQCILVISCQCLIVPATFTIIDSFIHTYDGFSS-MTQCLLIISLPLSSLWAS 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,989,034
Number of Sequences: 5004
Number of extensions: 75297
Number of successful extensions: 303
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)