Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_I17
(1319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0549 - 19352545-19353420 31 1.5
03_06_0318 + 33103467-33104232,33104332-33105548 31 2.7
11_06_0611 + 25461469-25461655,25461670-25462238 30 3.5
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 30 3.5
12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664... 30 4.7
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 30 4.7
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 29 6.2
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 29 8.2
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 29 8.2
>07_03_0549 - 19352545-19353420
Length = 291
Score = 31.5 bits (68), Expect = 1.5
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 228 PQL--DPRSGLARQGPRRLSR*VPRLHPSRPAERHRGGQ 338
PQ+ PR A P R PRLH S PA R RG +
Sbjct: 5 PQILPSPRLAAAAASPNSAFRPAPRLHSSAPARRGRGAR 43
>03_06_0318 + 33103467-33104232,33104332-33105548
Length = 660
Score = 30.7 bits (66), Expect = 2.7
Identities = 13/45 (28%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +1
Query: 682 LAYRRFLNDNGKYI--EMQKLSLQNKKLELQMKAYRTRLQELSKV 810
L Y+R + + +Y ++QK++ ++LE +++ Y+T+L++ S V
Sbjct: 419 LQYQRMMEEQSQYDREDLQKMAAMVQELEAEIEGYKTKLRDQSLV 463
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 30.3 bits (65), Expect = 3.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 650 SDASLVEMNTKHSCLSVLPASWPLTPLTVLPP 555
S +S +T S LS LP WPL P + PP
Sbjct: 74 SSSSSQPPSTSSSSLSQLPPPWPLAPACLSPP 105
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 30.3 bits (65), Expect = 3.5
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Frame = +3
Query: 309 RPAERHRGGQRCNQETTVHTATEEVRSERWREMQESGNNDICG---RCCHTGTTFEQYNV 479
R E H GG + + T T E RSE E GN CG R + GT +Y
Sbjct: 231 REEEMHCGGWEDDDDHYASTTTSETRSEE----GEMGNRSECGFAARSEYGGTAPSEY-- 284
Query: 480 PVPAPPDIVLRGR*RRQE 533
AP + LR R R E
Sbjct: 285 -AAAPLPLPLRRRDERSE 301
>12_02_1113 - 26165074-26165889,26166077-26166202,26166294-26166457,
26166539-26166576,26166670-26166885,26166984-26167145,
26167212-26167497,26167585-26167761,26167864-26167971,
26168076-26168175,26168283-26168359,26168608-26168803,
26169032-26169363,26169476-26169589,26169651-26169753
Length = 1004
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 641 SLVEMNTKHSCLSVLPASWPLTPLTVLPPFAMNEKYFLAPLSSAQYDIRWSG 486
SL+ + ++S + LP P TP P M + +PL A DIR G
Sbjct: 861 SLIPLPRRNSLMLPLPLPKPATPAAAASPLDMITEQCSSPLVIAPNDIRGGG 912
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 29.9 bits (64), Expect = 4.7
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = +3
Query: 219 TERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERH-----RGGQRCNQETTVHTATEEV 383
T + +DP+ G A + R + V R S+P H G CN + + E V
Sbjct: 469 TAQDLVDPQQGTAARRIRLVCS-VERASVSQPVSSHLQSEYEAGSCCNTRNSSNNKKESV 527
Query: 384 RSERWREMQESGNNDICGRCCHTGTTFEQYN 476
RSE D G CC+TG++ ++
Sbjct: 528 RSE-----------DEAGSCCNTGSSSNNHS 547
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 29.5 bits (63), Expect = 6.2
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +1
Query: 466 NNIMYQFPLHRISYCADDKGAKKYFSFIAKGGSTVNGVNGHDAGNTERHECFVFISTKLA 645
N I+ HRI D A + +++ G +GVNG G E ++F +LA
Sbjct: 999 NRIVDNANFHRIISMFTDHSATMHLAYLLGGPYCKDGVNGFSVGRIHAAE-YMFYRIQLA 1057
Query: 646 SEITLTIGQA 675
+ T I ++
Sbjct: 1058 APRTSGISES 1067
>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 494 WSGNWYIILFERGSCMATPSTDIVISTFLHFAPSFASDFFSCCVNCS 354
W G YI+LF + + ST I L + SD+ C NCS
Sbjct: 1480 WFGEEYILLFHKLDASSPHSTKINCFDELPMLMDYQSDWERRCNNCS 1526
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 700 LNDNGKYIEMQKLSLQNKKLELQMKAYRTRLQELSK 807
L + G +E+QKLS NK+L + + ++ EL K
Sbjct: 271 LRNEGYTLEVQKLSKDNKELNELLSGFTVKVTELDK 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,023,681
Number of Sequences: 37544
Number of extensions: 558207
Number of successful extensions: 1801
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4132076460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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