Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I10
         (1299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    30   0.61 
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    29   1.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    29   1.4  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    29   1.9  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   5.7  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   7.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   9.9  

>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +3

Query: 606 ELLKTQPHVVANSGHESIIKTISEPKQND-SLDIIVSAGTNEKPKDKAIQSPEGSSSPIN 782
           EL   +      S H +  KT S   Q   ++++   A + E+      +    +S P  
Sbjct: 423 ELESDEESTAETSKHVTSKKTSSRGGQTQQAVEVHTDANSPEENNTPVTKKEVETSKPPA 482

Query: 783 ASSKLPPVNEQETLKQAKSNQDQELKSDVLPE 878
            S   PPVNE   ++ + + + + L SDV  E
Sbjct: 483 VSGSTPPVNEAAVIESSNTLEKEPL-SDVATE 513


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = +3

Query: 216 KPVSALLKELSDRCENQFLNKQIKSAIDQCPQDPRKEFKCLLFYDMANRLCLATNTSQIT 395
           KPV    +E ++  E+   N+ I    D  P   ++    +  +  +    L  N SQ +
Sbjct: 352 KPVPVQTEETTETLEDLIKNRIISKTFDDVP---KRAPVAVTEFRPSELFELNENKSQRS 408

Query: 396 LKEDYVAEINKEQTLDNVCSEA 461
           L E+Y  E  K+   D   SEA
Sbjct: 409 LAEEYEEEFLKKSNADTYKSEA 430


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 360 RLCLATNTSQITLKEDYVAEI--NKEQTLDNVCSEAKNWVLSKFTDYKLYSSKILQVGCS 533
           R+ L   +  I  K  +  E+  + ++ L  + S    + L  F + ++ +   L + C 
Sbjct: 527 RVALENASKLIKRKSAFGTELRDHADELLQTLISLQNRFDLMNFDEMQMTAIVELLLTCL 586

Query: 534 DVCGVDVWTNLDVNFY 581
           D+CG  + TNL V+ Y
Sbjct: 587 DICGPVICTNLFVSDY 602


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 222 VSALLKELSDRCENQFLNKQIKSAIDQCPQDPRKE 326
           V +LLK +  +C + FL   +KS    C     KE
Sbjct: 98  VQSLLKIIEKKCSSDFLEANVKSQFTTCENKDSKE 132


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = -2

Query: 380 ISGQAQAVGHIIKQQTFKFFPRVLRTLIYGRLNLLIQKLIFTTI*KFFQQCRNWL 216
           I G + +V H I ++  + F + + +++ G  ++  +  I T   +FF QC++ L
Sbjct: 99  IKGSSSSVSHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGL 153


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = +3

Query: 705 IVSAGTNEKPKDKAIQSPEGSSSPINASS---KLPPVNEQETLKQAKSNQDQELKSDVLP 875
           I   G++      A+ S + ++SP N      +L  V   +    AK+++  EL  +  P
Sbjct: 175 IAVGGSSAGGNIAAVLSHKVAASPANFPPLVLQLLVVPVCDNTANAKTHKSWELFENT-P 233

Query: 876 ELNPMCLRM*YQMHHLINNLKWSN 947
           +L P    M Y+ H+L N   WSN
Sbjct: 234 QL-PAAKMMWYRRHYLPNEKDWSN 256


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 19/78 (24%), Positives = 33/78 (42%)
 Frame = +3

Query: 645  GHESIIKTISEPKQNDSLDIIVSAGTNEKPKDKAIQSPEGSSSPINASSKLPPVNEQETL 824
            G E I  T++E   +D L+ + +        D          S +N  +K   V+E E  
Sbjct: 3919 GAEDITNTLNE---DDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENS 3975

Query: 825  KQAKSNQDQELKSDVLPE 878
               + NQD + + + +PE
Sbjct: 3976 DSEEENQDLDEEVNDIPE 3993


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,405,241
Number of Sequences: 5004
Number of extensions: 85819
Number of successful extensions: 269
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 709422546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)