Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I10
         (1299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0443 - 17808897-17809110,17809169-17813652                       34   0.21 
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    33   0.65 
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    31   2.0  
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    30   3.5  
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322...    29   8.0  

>11_04_0443 - 17808897-17809110,17809169-17813652
          Length = 1565

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +3

Query: 609 LLKTQPHVVANSGHESIIKTISEPKQNDSLDIIVSAGTNEKPKDKAIQSPEGSSSPINAS 788
           L+  QPH+ +N G+   IK   +P    ++  IV      KP    IQ   GSS P+  +
Sbjct: 23  LISRQPHIFSN-GYR--IKFNEDPSSECNIGYIVPEWVESKPSLSDIQELHGSSKPLPTT 79

Query: 789 SKLPPVNEQE 818
           + + P+  ++
Sbjct: 80  TIILPLKSEK 89


>12_02_0318 -
           17457182-17462232,17462745-17462955,17463356-17463403,
           17466161-17466346
          Length = 1831

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 609 LLKTQPHVVANSGHESIIKTISEPKQNDSLDIIVSAGTNEKPKDKAIQSPEGSSSPINAS 788
           L+ +QPH+ +N G++  IK   EP ++  +  IV    +EKP    I +  G S  +  +
Sbjct: 157 LVSSQPHIFSN-GYQ--IKFNEEPSEDCDIGYIVPKWVDEKPSIDDIHAVYGYSKKLPTT 213

Query: 789 SKLPPVNEQETL 824
           + + P+   + L
Sbjct: 214 TIILPLKSDKIL 225


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 315 PRKEFKCLLFYDMANRLCLATNTSQITLKEDYVAEINKEQTLDNV-CSEAKNWVLSKFTD 491
           P  E  C+L   + N    + +TS      D +  I      D+V CS+ K W+L + TD
Sbjct: 499 PVLEVLCVLL--LQNAGLKSKDTSARCFAIDLLGGIASRLKRDSVICSKEKLWILQELTD 556

Query: 492 YKLYSSKILQVGC 530
            +   SKIL+  C
Sbjct: 557 TESDGSKILKNKC 569


>01_01_1098 -
           8691312-8692430,8692640-8693509,8694522-8696105,
           8696199-8696258,8696336-8696414,8696494-8696555,
           8697129-8697204,8697367-8697419,8698181-8698270,
           8698411-8698458
          Length = 1346

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = +3

Query: 309 QDPRKEFKCLLFYDMANRLCLATNTSQITLKEDYVAEINKEQTLDNVCSEAKNWVLSKFT 488
           + P K+ +    + + + + +A  +S +   ED +A++   +T+DN+CS+  +W  S+F 
Sbjct: 671 ESPLKDNRATASWQVPSSV-IALVSSILRKGEDDLAQLYALRTIDNICSQGTDWT-SRFA 728

Query: 489 DYKLYS 506
              + S
Sbjct: 729 SQDVIS 734


>04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,
            3228617-3229074,3229342-3229864
          Length = 644

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 1091 HSIRSFWDFRSSFXVVIKFLGGEXDFQYXVDLXLHVLDFSATGAING 951
            HSI S+W +RSS   + K  GG   F+Y  +L      FS+   + G
Sbjct: 318  HSILSWWKWRSSSRDIDKRTGGVRQFKYN-ELAAATNQFSSENRLIG 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,231,455
Number of Sequences: 37544
Number of extensions: 490956
Number of successful extensions: 1319
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4050598896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)